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Detailed information on CNT30671301


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 6e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692505Setaria viridisOryza sativa56.751.5585.93199forward
CNT30187034Setaria viridisSecale cereale47.0134.8184.85165forward
CNT30306637Setaria viridisTriticum aestivum55.8422.6685.71196forward
CNT30226858Setaria viridisHordeum vulgare47.8659.7988.1168forward
CNT30589645Setaria viridisMusa acuminata22.5114.5888.6179forward
CNT30553070Setaria viridisOryza glaberrima55.2724.186.08194forward
CNT30256420Setaria viridisAvena sativa26.2113.6788.0492forward
CNT3016434Setaria viridisZea mays27.3518.1890.6296forward
CNT3067127Setaria viridisLeersia perrieri56.9822.7885.5200forward
CNT30685047Setaria viridisTriticum urartu55.8437.0584.18196reverse complement
CNT30596922Setaria viridisOryza meridionalis55.2721.9286.6194forward
CNT30369850Setaria viridisOryza glumipatula55.2724.0486.08194forward
CNT30101038Setaria viridisOryza rufipogon31.0516.6794.5109forward
CNT30575711Setaria viridisOryza barthii31.0515.1294.5109forward
CNT30583731Setaria viridisEchinochloa crusgalli56.4131.3389.9198forward
CNT30116276Setaria viridisOryza nivara31.0513.3994.5109forward

Expression of CNT30671301

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MGTLRLMPRMLALMAVQRQTAASRSTSPCSSGQHWSFPRPGMLSFSRFSTFAHTCSLSALIGQDP

>peptide 2 (46 aa)
ILHGKSSPDPSPGHRSEENTYVHSDIDQHIDYNNIGAQDRSKAVVT*

Sequence

>CNT30671301
ATTTTACATGGCAAAAGCTCTCCCGATCCATCACCCGGACACCGAAGTGAAGAGAACACATACGTGCATTCAGATATAGACCAACACATAGACTATAATA
ACATAGGTGCACAAGATCGCAGCAAGGCAGTGGTTACTTAGAGGGGGCAGGTCGATGGGCACGTTGAGGTTGATGCCGAGGATGTTGGCCTTGATGGCGG
TGCAGAGGCAGACGGCGGCGTCGAGGTCGACGAGCCCCTGCAGCAGCGGGCAGCACTGGTCGTTCCCCAGGCCGGGGATGTTGAGCTTCAGTAGGTTCAG
CACGTTCGCGCACACCTGCAGCTTGAGCGCGTTGATCGGGCAGGATCCACC