CANTATAdb - search

Detailed information on CNT30116248

BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 2e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30553292	Oryza nivara	Oryza glaberrima	74.11	91.46	94.88	664	forward
CNT3067127	Oryza nivara	Leersia perrieri	27.57	28.13	94.33	247	forward
CNT30596851	Oryza nivara	Oryza meridionalis	76.23	85.38	85.94	683	forward
CNT30105270	Oryza nivara	Oryza longistaminata	50.89	87.86	92.11	456	forward
CNT30101038	Oryza nivara	Oryza rufipogon	61.83	84.71	93.68	554	forward

Expression of CNT30116248

Peptides detected in this lncRNA

>peptide 1 (36 aa)
TDAYTMRSIEYKLINQLCRYTYTSRRMKHALITSWN*

>peptide 2 (84 aa)
MGRLRLMPRMLARRAVQRQTAASRSTRPPSNGQHCSLSGTPIFSFSRLSTLAHTLSFSASIGHLFPPPDGGDGGGVTGGVGVGQ*

Sequence

>CNT30116248
GTACTGATGCATATACGATGAGATCCATCGAGTACAAATTAATTAATCAATTATGCAGATACACATATACAAGTAGACGAATGAAGCATGCTTTAATTAC
GTCGTGGAACTGAATCATATGCATGCATATATATCTCATTAATTTACGGGATGAAGGAGGAAATTAAGGCACGCAGATACATATGATGATTTGAACAAGG
AACAAATTAGACATAGATAGATATATAGTTGTACGTGGCCTGGTGGTCGTTCTTCGTACGTTCTTGTGTGTAGCAAGCAGTGAAGTAGAATGGAGCAGCA
GCTATATTAGTTGCTGCACTGGAAGCCGGAGGGGACGGAGCGGCCGCAGTAGTTGACGAGGAGGCTGAGGTTGATGGGGAGGTTGAGGTTGATGCCAAGG
ATGTTGGCGCGGAGGGCGGTGCAGAGGCAGACGGCGGCGTCGAGGTCGACGAGGCCACCCAGCAACGGGCAGCACTGCTCGCTCTCCGGCACGCCGATCT
TCAGCTTCAGCAGGTTGAGCACGTTGGCGCACACGCTCAGCTTCAGCGCGTCGATCGGGCACTTATTCCCTCCACCCGACGGCGGCGACGGAGGCGGCGT
CACCGGCGGCGTCGGTGTGGGGCAGTAGGGCTCGCATGCCTGCACTACTGCACCCATCTGCATGGTGAAGAGCACATTGAGGGCAAGGAACAGCGCACAA
ACCTGCACCTTCTTGCCGGCCATCTTAATTAATTAGCTAGCTCTACTACTGCTTAGCAATTAATTAGCTTAATTAGCAGCTACTGCCTATAGCTCAGCTC
GATCGATCGATCAGAAGAAGCTGGAGCTGCTTTTTGATATTTGCTAGCTCGATCGGCCGGGATGCATTTCCTCGGGGGTGTTTTCGCTCCTATTTA