Detailed information on CNT30226858


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SU35|ERLL1_ARATH, E-value = 1e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692505Hordeum vulgareOryza sativa66.1948.1990.32186forward
CNT30671301Hordeum vulgareSetaria viridis59.7947.8688.1168forward
CNT30522474Hordeum vulgareSetaria italica36.6521.3784.47103forward
CNT30192172Hordeum vulgareSecale cereale91.4648.4991.83257forward
CNT30306637Hordeum vulgareTriticum aestivum93.2430.2995.8262forward
CNT30392194Hordeum vulgareTriticum turgidum32.7423.9688.0492forward
CNT30589645Hordeum vulgareMusa acuminata41.6421.5986.32117forward
CNT30553070Hordeum vulgareOryza glaberrima63.3522.1190.45178forward
CNT30248153Hordeum vulgareAvena sativa56.2323.6286.71158forward
CNT30664801Hordeum vulgareTriticum dicoccoides26.6923.9689.3375forward
CNT30446343Hordeum vulgareSaccharum spontaneum32.3812.583.5291reverse complement
CNT3067127Hordeum vulgareLeersia perrieri66.5521.389.3187forward
CNT30348037Hordeum vulgareEragrostis tef50.8928.6686.71143forward
CNT30365845Hordeum vulgareSorghum bicolor48.428.9484.56136forward
CNT30596922Hordeum vulgareOryza meridionalis82.5626.2187.93232forward
CNT30369753Hordeum vulgareOryza glumipatula62.2819.2790.86175forward
CNT30105270Hordeum vulgareOryza longistaminata34.8818.8888.7898forward
CNT30101038Hordeum vulgareOryza rufipogon63.3527.2290.45178forward
CNT30575558Hordeum vulgareOryza barthii62.2824.1490.29175forward
CNT30583731Hordeum vulgareEchinochloa crusgalli88.9739.5683.6250forward
CNT30116352Hordeum vulgareOryza nivara62.2820.9390.86175forward
CNT30593752Hordeum vulgareEragrostis curvula48.411.3883.82136forward

Expression of CNT30226858

Peptides detected in this lncRNA

>peptide 1 (92 aa)
DQMGQVKLAGHFLPHWLSRRVRSMGTLSLMPRMLALMAVQRHTAASRSASPPRSGQHCSFAGTPILSFSRFSTLAHTPSFNVLIEQLPPPVDG

Sequence

>CNT30226858
TGGATCAGATGGGGCAGGTGAAGTTGGCGGGGCACTTCTTGCCGCACTGGTTGAGTAGGAGGGTCAGGTCGATGGGGACGTTGAGCTTGATGCCGAGGAT
GTTGGCCCTGATGGCGGTGCAGAGGCACACGGCGGCGTCGAGGTCGGCGAGCCCGCCCAGGAGTGGGCAGCACTGCTCGTTCGCCGGCACGCCGATCTTG
AGCTTCAGCAGGTTCAGCACGTTGGCGCACACGCCCAGCTTCAACGTGTTGATCGAGCAGCTGCCCCCGCCGGTCGACGGC