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Detailed information on CNT30348037


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 1e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696568Eragrostis tefOryza sativa45.2927.2688.05226forward
CNT30676135Eragrostis tefSetaria viridis27.0535.991.11135forward
CNT30308206Eragrostis tefTriticum aestivum28.6623.7587.41143forward
CNT30226858Eragrostis tefHordeum vulgare28.6650.8986.71143forward
CNT30447788Eragrostis tefSaccharum spontaneum21.2418.2884.91106forward
CNT3016364Eragrostis tefZea mays49.933.0785.94249forward
CNT3067127Eragrostis tefLeersia perrieri44.0925.0686.82220forward
CNT30685047Eragrostis tefTriticum urartu27.0525.5288.89135reverse complement
CNT30365845Eragrostis tefSorghum bicolor28.263090.07141forward
CNT30596933Eragrostis tefOryza meridionalis45.2921.2887.61226forward
CNT30371173Eragrostis tefOryza glumipatula46.4929.486.21232forward
CNT30105270Eragrostis tefOryza longistaminata22.8521.9785.96114forward
CNT30101038Eragrostis tefOryza rufipogon26.6520.3490.23133forward
CNT30575711Eragrostis tefOryza barthii43.8930.3785.39219forward
CNT30583731Eragrostis tefEchinochloa crusgalli31.0624.5390.97155forward
CNT30116276Eragrostis tefOryza nivara43.8926.985.39219forward
CNT30593752Eragrostis tefEragrostis curvula27.6611.5586.96138forward

Expression of CNT30348037

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MDTITNGSTTPCVNKITKMGWKKICNEKLIRSCNGRARH*

>peptide 2 (72 aa)
MRLRSMGRLRLMPSTLALMAVQRQTAASRSTSPPSSEQHGSYWGSPTLTRFSTLAHTFSFSASIGHLPCPGVD

Sequence

>CNT30348037
CCGTCTTACATTGAATGGACACAATTACAAATGGTAGTACAACTCCATGCGTGAACAAAATTACAAAGATGGGGTGGAAAAAAATCTGTAACGAGAAACT
TATTCGATCGTGCAACGGCCGAGCTAGACATTAAGCCAGCTGCCGCTGCAAGAATGAAATCGACTTTGGGAAGAACACGCGACAGAGAGCACAAGCATGC
ACATTTGGTACGTAGCTCCTCATCAGCTTAGTTGGGGCACTTGAAGTCTTCAGGGCAGTACTTGCCGCAGTTGTTGAGGATGAGGCTGAGGTCGATGGGC
AGGTTGAGGTTGATGCCGAGCACGTTGGCCTTGATGGCGGTGCAGAGGCAGACGGCGGCGTCCAGGTCGACGAGCCCGCCCAGCAGCGAGCAGCACGGCT
CGTACTGGGGCAGCCCGACCTTGACGAGGTTCAGCACGTTGGCGCACACCTTCAGCTTCAGCGCGTCGATCGGGCACTTGCCGTGCCCGGGGGTCGACG