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Detailed information on CNT30583731


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 5e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696568Echinochloa crusgalliOryza sativa22.6317.2588.81143forward
CNT30671301Echinochloa crusgalliSetaria viridis31.3356.4189.9198forward
CNT30522474Echinochloa crusgalliSetaria italica16.7721.9989.62106forward
CNT30192172Echinochloa crusgalliSecale cereale26.4231.5184.43167forward
CNT30308206Echinochloa crusgalliTriticum aestivum27.2228.5787.79172forward
CNT30226858Echinochloa crusgalliHordeum vulgare39.5688.9783.6250forward
CNT30553070Echinochloa crusgalliOryza glaberrima20.8916.487.88132forward
CNT3016364Echinochloa crusgalliZea mays25.1621.1284.91159forward
CNT3067127Echinochloa crusgalliLeersia perrieri39.7228.5984.86251forward
CNT30685047Echinochloa crusgalliTriticum urartu25.4730.4388.2161reverse complement
CNT30348037Echinochloa crusgalliEragrostis tef24.5331.0690.97155forward
CNT30365845Echinochloa crusgalliSorghum bicolor21.3628.7288.89135forward
CNT30596933Echinochloa crusgalliOryza meridionalis22.6313.4788.11143forward
CNT30369850Echinochloa crusgalliOryza glumipatula20.8916.3687.88132forward
CNT30105270Echinochloa crusgalliOryza longistaminata18.0421.9784.21114forward
CNT30575711Echinochloa crusgalliOryza barthii20.7318.1789.31131forward
CNT30116276Echinochloa crusgalliOryza nivara20.7316.0989.31131forward
CNT30593752Echinochloa crusgalliEragrostis curvula21.5211.3886.03136forward

Expression of CNT30583731

Peptides detected in this lncRNA

>peptide 1 (65 aa)
TARVDTTCTKIYFTYMKLQTHMFVRRTTVCMATESSISRAITLTRSEKRTQACMIYACRCRPTRT*

>peptide 2 (85 aa)
MPRMLALMAVQRQTAASRSTSPSSSGQHWSFPVGRFSLIRFSTLAHTSSLRVLIGQYPPDGVGTTGGVGQYGVQPCTAAAKVRTDR

>peptide 3 (46 aa)
HSSSRHNLYKNLFHIYEVTDTHVCTKNNSLHGNRELDLPSDHSDPK*

Sequence

>CNT30583731
CACAGCTCGAGTCGACACAACTTGTACAAAAATTTATTTCACATATATGAAGTTACAGACACACATGTTTGTACGAAGAACAACAGTTTGCATGGCAACA
GAGAGCTCGATCTCCCGAGCGATCACTCTGACCCGAAGTGAGAAGAGAACACAAGCATGCATGATATATGCATGCAGATGCAGACCAACACGTACATAGT
GAAAACATAGGCACAGAACAAGATCGCAGGCAGGGCAGTGGATGTAGATGATGATGATCAGATGACATAGATCACGGCTAGCTGGTAACTTAAACGGGGC
AGGTGAAGTCTGCCGGGCAGACCTTGCCGCAGTTGTTGAGGAGGAGGCTCAAGTCGATAGGCACATTGAGGTTGATGCCGAGGATGTTGGCCTTGATGGC
GGTGCAGAGGCAGACGGCGGCGTCCAGGTCGACGAGCCCGTCCAGCAGCGGGCAGCACTGGTCGTTCCCCGTGGGGAGGTTCAGCTTGATCAGGTTCAGC
ACGTTGGCGCACACCTCCAGCTTGAGGGTGTTGATCGGGCAGTATCCGCCCGACGGCGTCGGCACCACCGGCGGGGTAGGGCAGTATGGTGTGCAGCCGT
GCACGGCCGCCGCGAAGGTGAGGACAGACAGG