CANTATAdb - search

Detailed information on CNT30575612

BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 2e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30692548	Oryza barthii	Oryza sativa	97.47	100	99.74	771	forward
CNT30187034	Oryza barthii	Secale cereale	28.82	48.1	87.72	228	forward
CNT30589645	Oryza barthii	Musa acuminata	14.03	20.48	86.49	111	forward
CNT30553070	Oryza barthii	Oryza glaberrima	99.49	97.76	99.87	787	forward
CNT3067127	Oryza barthii	Leersia perrieri	27.43	24.72	92.63	217	forward
CNT30596922	Oryza barthii	Oryza meridionalis	66.25	59.21	92.94	524	forward
CNT30369850	Oryza barthii	Oryza glumipatula	99.49	97.52	98.86	787	forward
CNT30116276	Oryza barthii	Oryza nivara	99.24	96.44	98.85	785	forward

Expression of CNT30575612

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MLMPRTLALMAVQRQTAASRSTRPPSNGQHCSLSGTPIFSLSRLSTLAHTLSFSASIGHLFPPPDGGDGGGVTGGVGVGQ*

Sequence

>CNT30575612
TAGATAGCACAAGTAGTACGTACGTACACTGGAGGAAACTTTTATTTGACAGTACGCATTAAAATAACAAGATACATATATAGATGATCGATCTGATCAT
CAATAATCACACTGATAGATCGAGATAAGTATATATGTATGACACAACTGCAACACACAGACTAAGCCATGCAAAGCTTAAGCCTTAATTAGGTAGCTAG
GGTTGTGGTGGTAATGAAGATTAAGAATCAGATGAGTGGGCAGGAGAAGTCGGAAGGGCAGGTCTTGTGGCAGTAGTTGAGGAGGAGGACGAGGTCGACG
GGGACGTTGATGTTGATGCCGAGGACGTTGGCCTTGATGGCGGTGCAGAGGCAGACGGCGGCGTCGAGGTCGACGAGGCCACCCAGCAACGGGCAGCACT
GCTCGCTCTCCGGCACGCCGATCTTCAGCTTGAGCAGGTTGAGCACGTTGGCGCACACGCTCAGCTTCAGCGCGTCGATCGGGCACTTATTCCCTCCACC
CGACGGCGGCGACGGAGGCGGCGTCACCGGCGGCGTCGGTGTGGGGCAGTAGGGCTCGCATGCCTGCACTACTGCACCCATCTGCATGGTGAAGAGCACA
TTGAGGGCAAGGAACAGCGCACAAACCTGCACCTTCTTGCCGGCCATCTTAATTAATTAGCTAGCTCTACTACTGCTTAGCAATTAATTAGCTTAATTAG
CAGCTACTGCCTATAGCTCAGCTCGATCGATCGATCAGAAGAAGCTGGAGCTGCTTTTTGATATTTGCTAGCTCGATCGGCCGGGATGCAT