Detailed information on CNT30365845


BLAST search results

BLAST vs Swiss-Prot:
sp|P14009|14KD_DAUCA, E-value = 4e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691617Sorghum bicolorOryza sativa46.630.2588.58219forward
CNT30676135Sorghum bicolorSetaria viridis36.3845.4894.74171forward
CNT30522474Sorghum bicolorSetaria italica26.1725.5286.18123forward
CNT30306637Sorghum bicolorTriticum aestivum28.315.3885.71133forward
CNT30226858Sorghum bicolorHordeum vulgare28.9448.484.56136forward
CNT30589645Sorghum bicolorMusa acuminata25.7422.3283.47121forward
CNT30555088Sorghum bicolorOryza glaberrima45.5326.7883.18214forward
CNT3016364Sorghum bicolorZea mays30.2118.8686.62142forward
CNT3067127Sorghum bicolorLeersia perrieri28.0915.0388.64132forward
CNT30685047Sorghum bicolorTriticum urartu28.9425.7185.29136reverse complement
CNT30348037Sorghum bicolorEragrostis tef3028.2690.07141forward
CNT30596933Sorghum bicolorOryza meridionalis48.321.3784.14227forward
CNT30369704Sorghum bicolorOryza glumipatula23.8322.1389.29112forward
CNT30106366Sorghum bicolorOryza longistaminata18.0927.4292.9485forward
CNT30101038Sorghum bicolorOryza rufipogon44.6832.1183.33210forward
CNT30575711Sorghum bicolorOryza barthii44.0428.7183.09207forward
CNT30583731Sorghum bicolorEchinochloa crusgalli28.7221.3688.89135forward
CNT30115994Sorghum bicolorOryza nivara24.2615.8392.98114forward
CNT30593752Sorghum bicolorEragrostis curvula28.7211.385.93135forward

Expression of CNT30365845

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MRLRSMGRLRLMPRILPLMAVQRQSAASRSTSPSSSGQHGSVGGTPTLALIRPRTLAHTPNLSASRGHLPNEAGVGVGVDGVDGVGQ

>peptide 2 (37 aa)
MHAYKHMHTTDQLARIQNQINLNSSHHPCSCMIMPRG*

Sequence

>CNT30365845
CAAAGCTGATCAAACAACAAGAGCTACGTGCGTGGCCGTCGCATGCATGCATATAAACACATGCATACAACAGACCAGCTAGCACGTATACAAAACCAAA
TAAACCTGAATTCGAGCCATCATCCATGCAGCTGCATGATCATGCCGCGCGGCTGAATGCTTAGAGGCACTTGAAGCCGGTGGGCACGCTCTTGCCGCAG
TGGTTGAGGATGAGGCTGAGATCGATGGGCAGGTTGAGGTTGATGCCGAGGATATTGCCCTTGATGGCGGTGCAGAGGCAGAGTGCGGCCTCGAGGTCGA
CGAGCCCCTCCAGCAGCGGGCAGCATGGCTCCGTGGGCGGCACGCCCACCTTGGCCTTGATCAGGCCTAGAACATTGGCGCACACGCCCAACTTGAGCGC
GTCACGGGGGCACTTGCCGAACGAGGCCGGCGTCGGGGTCGGCGTCGACGGGGTGGATGGGGTGGGGCAG