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Detailed information on CNT30596851


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 5e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522474Oryza meridionalisSetaria italica14.524.0787.07116forward
CNT30553292Oryza meridionalisOryza glaberrima70.3877.5589.52563forward
CNT3067127Oryza meridionalisLeersia perrieri45.6241.5785.75365forward
CNT30101038Oryza meridionalisOryza rufipogon58.2571.2584.55466forward
CNT30116248Oryza meridionalisOryza nivara85.3876.2385.94683forward

Expression of CNT30596851

Peptides detected in this lncRNA

>peptide 1 (39 aa)
EVELKHACIYISLIYGMKEEIDTYDDLNKEQMIVLDIDR*

>peptide 2 (90 aa)
MGRLRSTGTLMLMPRMLALMAVQRQTAASRSTRPPSSGQHSSLSGTPTLSFSRLSTLAHTPSFSASIGHLFPPPPPPDGGGITGGVGVGQ*

Sequence

>CNT30596851
TGGAAGTGGAACTGAAGCATGCATGCATATATATCTCATTAATTTACGGGATGAAGGAGGAAATTGATACATATGATGATTTGAACAAGGAACAAATGAT
AGTATTAGACATAGATAGATAGATATATAGTTGTACGTGGTGGTCGTTCACTCTCGTACGTGTAGCATATAGCAAGCAGTGAAGTAGAATGGATGGAGCT
GCAGGCTAGTTGCTGCACTGGAAGCCGGAGGGGACGGAGCGGCCGCAGTAGTTGACGAGGAGGCTGAGGTTGATGGGGAGGTTGAGGTCGACGGGGACGT
TGATGTTGATGCCGAGGATGTTGGCCTTGATGGCGGTGCAGAGGCAGACGGCGGCGTCGAGGTCGACGAGGCCACCCAGCAGCGGGCAGCACTCCTCGCT
CTCCGGCACCCCCACCTTGAGCTTCAGCAGGTTGAGCACGTTGGCGCACACGCCCAGCTTCAGCGCGTCGATCGGGCACTTATTCCCTCCACCGCCACCA
CCCGACGGCGGCGGCATCACCGGCGGGGTCGGTGTGGGGCAGTAGGGCTCGCATGCCTGCACTACTGCACCCATCTGCATGGTGATGAGCACATTGAGGG
CAAGGAACAGCGCACAGACCTGCACCTTCTTCTTGCCGCCCATCGTCTTAATTAATTAAGTAGCTACTACTGCTTAGCAATCAGCAGCTTCTGCCTATAT
ATAGCTCAGCTCGTTCGATCGATCAGAAGAAGAAGCTGGAGCTGGAGATGGAGCTGCCTTTTGATATTAATTTGCTAGCTAGCTCGATCGGCCGGGATGC