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Detailed information on CNT30692548


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 1e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187034Oryza sativaSecale cereale29.5748.187.72228forward
CNT30296862Oryza sativaTriticum aestivum28.445.9187.21219forward
CNT30392194Oryza sativaTriticum turgidum10.5121.0987.6581forward
CNT30589645Oryza sativaMusa acuminata14.420.4886.49111forward
CNT30553070Oryza sativaOryza glaberrima99.7495.5399.87769forward
CNT3067127Oryza sativaLeersia perrieri28.1524.7293.09217forward
CNT30596922Oryza sativaOryza meridionalis67.9659.2193.13524forward
CNT30369850Oryza sativaOryza glumipatula99.7495.2998.83769forward
CNT30575612Oryza sativaOryza barthii10097.4799.74771forward
CNT30116404Oryza sativaOryza nivara10094.7298.7771forward

Expression of CNT30692548

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MLMPRTLALMAVQRQTAASRSTRPPSNGQHCSLSGTPIFSFSRLSTLAHTLSFSASIGHLFPPPDGGDGGGVTGGVGVGQ*

Sequence

>CNT30692548
GTACGTACACTGGAGGAAACTTTTATTTGACAGTACGCATTAAAATAACAAGATACATATATTAGATGATCGATCTGATCATCAATAATCACACTGATAG
ATCGAGATAAGTATATATGTATGACACAACTGCAACACACAGACTAAGCCATGCAAAGCTTAAGCCTTAATTAGGTAGCTAGGGTTGTGGTGGTAATGAA
GATTAAGAATCAGATGAGTGGGCAGGAGAAGTCGGAAGGGCAGGTCTTGTGGCAGTAGTTGAGGAGGAGGACGAGGTCGACGGGGACGTTGATGTTGATG
CCGAGGACGTTGGCCTTGATGGCGGTGCAGAGGCAGACGGCGGCGTCGAGGTCGACGAGGCCACCCAGCAACGGGCAGCACTGCTCGCTCTCCGGCACGC
CGATCTTCAGCTTCAGCAGGTTGAGCACGTTGGCGCACACGCTCAGCTTCAGCGCGTCGATCGGGCACTTATTCCCTCCACCCGACGGCGGCGACGGAGG
CGGCGTCACCGGCGGCGTCGGTGTGGGGCAGTAGGGCTCGCATGCCTGCACTACTGCACCCATCTGCATGGTGAAGAGCACATTGAGGGCAAGGAACAGC
GCACAAACCTGCACCTTCTTGCCGGCCATCTTAATTAATTAGCTAGCTCTACTACTGCTTAGCAATTAATTAGCTTAATTAGCAGCTACTGCCTATAGCT
CAGCTCGATCGATCGATCAGAAGAAGCTGGAGCTGCTTTTTGATATTTGCTAGCTCGATCGGCCGGGATGC