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Detailed information on CNT30447788


BLAST search results

BLAST vs Swiss-Prot:
sp|P14009|14KD_DAUCA, E-value = 7e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187285Saccharum spontaneumSecale cereale16.926.4990.8298forward
CNT30226697Saccharum spontaneumHordeum vulgare19.8321.583.48115forward
CNT30553011Saccharum spontaneumOryza glaberrima25.3416.8689.8147forward
CNT3067127Saccharum spontaneumLeersia perrieri22.7615.0389.39132forward
CNT30348037Saccharum spontaneumEragrostis tef18.2821.2484.91106forward
CNT30367039Saccharum spontaneumSorghum bicolor38.9738.6389.82226forward
CNT30369831Saccharum spontaneumOryza glumipatula27.2425.7784.18158forward
CNT30105270Saccharum spontaneumOryza longistaminata25.3428.3289.8147forward
CNT30101097Saccharum spontaneumOryza rufipogon36.7221.4786.38213forward
CNT30575856Saccharum spontaneumOryza barthii25.3416.2489.8147forward
CNT30593838Saccharum spontaneumEragrostis curvula37.5929.5489.45218forward

Expression of CNT30447788

Peptides detected in this lncRNA

>peptide 1 (35 aa)
SSCRVPPGLSTRSIMDPSSTNTGRRDDGHVACMHA*

>peptide 2 (64 aa)
RRVGSRQASRHDRSWIHPAQTQDDAMMDMLHACMHDSRFVKKHTPKAKAKQNKLKRRTKNCAVH*

>peptide 3 (56 aa)
MGRLRLMPRMLARRAVQRHTAASRSASPWISVQHGVLGGVPRLTLISPLSTLAHTPS

Sequence

>CNT30447788
ATCGTCGTGTCGGGTCCCGCCAGGCCTCTCGACACGATCGATCATGGATCCATCCAGCACAAACACAGGACGACGCGATGATGGACATGTTGCATGCATG
CATGCATGATAGCAGATTCGTGAAGAAACACACACCCAAAGCAAAAGCAAAACAAAACAAATTAAAGCGACGAACGAAGAACTGTGCTGTGCACTAGTAG
CTTGTACTTGTTGCTGAGAAATCATGATTATTTAGACCGGCCGGCCGGGTGTTGGCGACGATGAGATCGATCAGGAGCACTGGAAGCCCGAGGGGACGCG
CCTGCCGCAGTAGTTGACGAGGAGGCTGAGGTTGATGGGCAGGTTGAGGAGCACTGGAAGCCCGAGGGGACGCGCCTGCCGCAGTAGTTGACGAGGAGGC
TGAGGTTGATGGGCAGGTTGAGGTTGATGCCCAGGATGTTGGCTCGCAGGGCGGTGCAGAGGCACACCGCAGCCTCCAGGTCCGCCAGCCCCTGGATCAG
CGTGCAGCACGGCGTCCTGGGCGGCGTCCCCAGGTTGACGTTGATCAGCCCGTTGAGCACGTTGGCGCACACGCCCAGCT