CANTATAdb - search

Detailed information on CNT30553070

BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 2e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30692548	Oryza glaberrima	Oryza sativa	95.53	99.74	99.87	769	forward
CNT30671301	Oryza glaberrima	Setaria viridis	24.1	55.27	86.08	194	forward
CNT30187034	Oryza glaberrima	Secale cereale	28.32	48.1	87.72	228	forward
CNT30296862	Oryza glaberrima	Triticum aestivum	27.2	45.91	87.21	219	forward
CNT30226858	Oryza glaberrima	Hordeum vulgare	22.11	63.35	90.45	178	forward
CNT30392194	Oryza glaberrima	Triticum turgidum	10.06	21.09	87.65	81	forward
CNT30589645	Oryza glaberrima	Musa acuminata	13.79	20.48	86.49	111	forward
CNT3067127	Oryza glaberrima	Leersia perrieri	26.96	24.72	93.09	217	forward
CNT30685047	Oryza glaberrima	Triticum urartu	30.31	46.12	86.48	244	reverse complement
CNT30596922	Oryza glaberrima	Oryza meridionalis	65.09	59.21	93.13	524	forward
CNT30369850	Oryza glaberrima	Oryza glumipatula	96.89	96.65	98.97	780	forward
CNT30100906	Oryza glaberrima	Oryza rufipogon	28.32	22.94	99.12	228	forward
CNT30575612	Oryza glaberrima	Oryza barthii	96.89	98.61	99.87	780	forward
CNT30583731	Oryza glaberrima	Echinochloa crusgalli	16.4	20.89	87.88	132	forward
CNT30116404	Oryza glaberrima	Oryza nivara	96.89	95.82	98.85	780	forward

Expression of CNT30553070

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MLMPRTLALMAVQRQTAASRSTRPPSNGQHCSLSGTPIFSFSRLSTLAHTLSFSASIGHLFPPPDGGDGGGVTGGVGVGQ*

Sequence

>CNT30553070
GATAGATAGATAGATAGATAGATAGCACAAGTAGTACGTACGTACACTGGAGGAAACTTTTATTTGACAGTACGCATTAAAATAACAAGATACATATATA
GATGATCGATCTGATCATCAATAATCACACTGATAGATCGAGATAAGTATATATGTATGACACAACTGCAACACACAGACTAAGCCATGCAAAGCTTAAG
CCTTAATTAGGTAGCTAGGGTTGTGGTGGTAATGAAGATTAAGAATCAGATGAGTGGGCAGGAGAAGTCGGAAGGGCAGGTCTTGTGGCAGTAGTTGAGG
AGGAGGACGAGGTCGACGGGGACGTTGATGTTGATGCCGAGGACGTTGGCCTTGATGGCGGTGCAGAGGCAGACGGCGGCGTCGAGGTCGACGAGGCCAC
CCAGCAACGGGCAGCACTGCTCGCTCTCCGGCACGCCGATCTTCAGCTTCAGCAGGTTGAGCACGTTGGCGCACACGCTCAGCTTCAGCGCGTCGATCGG
GCACTTATTCCCTCCACCCGACGGCGGCGACGGAGGCGGCGTCACCGGCGGCGTCGGTGTGGGGCAGTAGGGCTCGCATGCCTGCACTACTGCACCCATC
TGCATGGTGAAGAGCACATTGAGGGCAAGGAACAGCGCACAAACCTGCACCTTCTTGCCGGCCATCTTAATTAATTAGCTAGCTCTACTACTGCTTAGCA
ATTAATTAGCTTAATTAGCAGCTACTGCCTATAGCTCAGCTCGATCGATCGATCAGAAGAAGCTGGAGCTGCTTTTTGATATTTGCTAGCTCGATCGGCC
GGGAT