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Detailed information on CNT30105270


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZSP6|AIR1L_ARATH, E-value = 3e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676135Oryza longistaminataSetaria viridis22.3530.8587.07116forward
CNT30306637Oryza longistaminataTriticum aestivum21.9713.1885.09114forward
CNT30226858Oryza longistaminataHordeum vulgare18.8834.8888.7898forward
CNT30589645Oryza longistaminataMusa acuminata24.2823.2583.33126forward
CNT30552987Oryza longistaminataOryza glaberrima94.6170.8593.28491forward
CNT30664801Oryza longistaminataTriticum dicoccoides14.4523.9686.6775forward
CNT30447788Oryza longistaminataSaccharum spontaneum28.3225.3489.8147forward
CNT3067127Oryza longistaminataLeersia perrieri28.3216.7490.48147forward
CNT30348037Oryza longistaminataEragrostis tef21.9722.8585.96114forward
CNT30367039Oryza longistaminataSorghum bicolor23.1220.5188.33120forward
CNT30369755Oryza longistaminataOryza glumipatula79.7767.8792.27414forward
CNT30101097Oryza longistaminataOryza rufipogon92.6848.4993.56481forward
CNT30575856Oryza longistaminataOryza barthii90.3751.8292.96469forward
CNT30583731Oryza longistaminataEchinochloa crusgalli21.9718.0484.21114forward
CNT30116248Oryza longistaminataOryza nivara87.8650.8992.11456forward
CNT30593838Oryza longistaminataEragrostis curvula31.4122.0990.8163forward

Expression of CNT30105270

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MGRLRLMPRMLARRAVQRHTAASRSASPWMRLQHGCRGVGEGEEEEVQ

>peptide 2 (70 aa)
MDGAAALVAALEAGRDGAAAVVDEEAEVDGEVEVDAKDVGAEGGAEAHGGLKVGEPLDEAATRLPRRRRR*

>peptide 3 (31 aa)
MRSIEYKLINQLCRYTHTRRRMKHALITSWN*

Sequence

>CNT30105270
ACGTACTGATATGATGCATATACGATGAGATCCATCGAGTACAAATTAATTAATCAATTATGCAGATACACACATACACGTAGACGAATGAAGCATGCTT
TAATTACGTCGTGGAACTGAATCATATGCATGCATATATATCTCTTTAATTTACGGGATGAAGGAGGAAATTAAGGCACGCAGATACATATGACGATGAT
TTGAACAAGGAACAAATTAGACATAGATAGATTGATATATAGTTGTACGTGGCCTGGTGGTCGTTCTTCGTTCTCGTGTGTAGTGAGGAATGGATGGAGC
TGCAGCTCTAGTTGCTGCACTGGAAGCCGGAAGGGACGGAGCGGCCGCAGTAGTTGACGAGGAGGCTGAGGTTGATGGGGAGGTTGAGGTTGATGCCAAG
GATGTTGGCGCGGAGGGCGGTGCAGAGGCACACGGCGGCCTCAAGGTCGGCGAGCCCCTGGATGAGGCTGCAACACGGCTGCCGCGGCGTCGGAGAAGGT
GAAGAAGAGGAGGTTCAGG