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Detailed information on CNT30652643


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 3e-74

BLAST vs NONCODE:
NONBNAT003428, E-value = 1e-35

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30728364Rosa chinensisCorchorus capsularis46.1742.2683.05295forward
CNT30381107Rosa chinensisManihot esculenta49.6152.4883.28317forward
CNT30526626Rosa chinensisPhaseolus vulgaris27.5450.5783.52176forward
CNT30629897Rosa chinensisVigna unguiculata28.4814.8685.16182forward
CNT30711140Rosa chinensisGlycine max42.4124.1582.29271forward
CNT30156649Rosa chinensisPistacia vera46.1719.1785.76295forward
CNT30221118Rosa chinensisHordeum vulgare18.1527.7587.93116forward
CNT30564557Rosa chinensisActinidia chinensis51.4982.2580.85329forward
CNT30238317Rosa chinensisBrassica oleracea45.3830.4381.72290forward
CNT30510187Rosa chinensisSolanum lycopersicum30.0521.7785.42192forward
CNT30243592Rosa chinensisAvena sativa51.842.8281.57331forward
CNT30309482Rosa chinensisCamelina sativa41.3198.8881.44264forward
CNT3062573Rosa chinensisArabidopsis lyrata45.0749.7481.25288forward
CNT30207651Rosa chinensisHelianthus annuus47.7326.4880.33305forward
CNT30362471Rosa chinensisSorghum bicolor27.3939.5981.71175forward
CNT30620568Rosa chinensisCajanus cajan31.328.4185.5200forward
CNT30359477Rosa chinensisLactuca sativa41.9444.8282.46268forward
CNT30574379Rosa chinensisVitis vinifera46.3229.7583.11296forward
CNT3035078Rosa chinensisCucumis melo39.4426.4282.14252forward
CNT30556551Rosa chinensisPanicum hallii51.3355.5981.1328forward
CNT30726943Rosa chinensisLupinus angustifolius44.7645.5481.82286forward

Expression of CNT30652643

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MSASSSIYDPANVTGSSARPSGSKYWPPGYRSLPSPTPSRPLIRNPSTSPMRTTWEPRTARML*

>peptide 2 (41 aa)
EVLKNPMATCLQVHSHKAFDSIRFTGKIRCRPQARFTIQQM*

>peptide 3 (31 aa)
MLVSSESDVYYVMLPVLELEPYIETSKVLCT*

Sequence

>CNT30652643
GAAGTTTTAAAAAATCCGATGGCAACTTGTTTACAAGTACATTCACATAAAGCTTTCGATTCAATTAGATTCACAGGCAAGATTAGATGTCGGCCTCAAG
CTCGATTTACGATCCAGCAAATGTGACAGGGTCATCAGCAAGGCCCAGTGGGTCAAAGTATTGGCCGCCGGGGTACAGATCATTGCCCTCTCCAACTCCA
TCTAGGCCGTTGATTCGGAACCCCTCAACAAGCCCCATGAGAACGACCTGGGAGCCAAGAACTGCTAGGATGCTCTGAGCGTGGACAAGGTTGGGGTTGC
CTAAATAGTCAAGACCACCTTCTGAGAAAATCTGAGCCCCGGCTTTGAACCAGACTGGTTCTTTGAAGTCCACTCTCACCCATTTCTCAAGAACTTCTGG
GGTGATGCAGCCAAATGCGCCGAGCATTGCCCACCGTCCGTGGATAACCTAGAGTTAATATAACAAAATTATGTGAATTGTCATGATATTATGTTGGTTT
CAAGTGAATCAGATGTGTATTATGTTATGTTGCCCGTCCTTGAATTAGAACCTTATATTGAGACATCAAAAGTACTTTGTACATAATCAATACCGGGAGA
ACTAGAGCATAACAAGGCTTTCAAAGCAACTAGCAAACC