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Detailed information on CNT30510187


BLAST search results

BLAST vs Swiss-Prot:
sp|P27489|CB23_SOLLC, E-value = 1e-77

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639243Solanum lycopersicumNymphaea colorata20.291982.68179forward
CNT30516186Solanum lycopersicumJuglans regia15.7635.7384.17139forward
CNT30728364Solanum lycopersicumCorchorus capsularis16.2120.4984.62143forward
CNT30381130Solanum lycopersicumManihot esculenta38.3299.4183.43338forward
CNT30526626Solanum lycopersicumPhaseolus vulgaris11.930.1785.71105forward
CNT30629897Solanum lycopersicumVigna unguiculata20.5214.7883.98181forward
CNT30505375Solanum lycopersicumNicotiana attenuata10.7733.9390.5395forward
CNT30711140Solanum lycopersicumGlycine max20.5216.1385.64181forward
CNT30156649Solanum lycopersicumPistacia vera20.1811.5784.27178forward
CNT30564558Solanum lycopersicumActinidia chinensis19.8446.385.14175forward
CNT30309482Solanum lycopersicumCamelina sativa19.6164.7985.55173forward
CNT3062296Solanum lycopersicumArabidopsis lyrata19.9537.8584.09176forward
CNT30652643Solanum lycopersicumRosa chinensis21.7730.0585.42192forward
CNT30213636Solanum lycopersicumHelianthus annuus20.2939.0883.24179forward
CNT30620568Solanum lycopersicumCajanus cajan19.952585.23176forward
CNT30358309Solanum lycopersicumLactuca sativa21.4319.6981.48189forward
CNT30574379Solanum lycopersicumVitis vinifera21.5419.183.16190forward
CNT3058205Solanum lycopersicumAmborella trichopoda18.2523.581.99161forward
CNT3022022Solanum lycopersicumPopulus trichocarpa19.9538.5185.23176forward
CNT3035078Solanum lycopersicumCucumis melo21.219.680.75187forward
CNT30726943Solanum lycopersicumLupinus angustifolius18.7126.2788.48165forward

Expression of CNT30510187

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MIEWYKATKSICEKNLRSRNKLSCVNPCIVSNRVVKVIQ*

>peptide 2 (58 aa)
MDKVWVAQIVQPTFTEDLGSSFEPYWFFEVHFYPFFKNFWCNATKSSKHGPSPMDNLE*

Sequence

>CNT30510187
ATTATGAATGAATGATTGAGTGGTACAAAGCTACAAAGTCGATATGTGAAAAAAATTTAAGATCCAGGAACAAACTTAGTTGCGTAAACCCATGCATTGT
TAGCAACAGGGTTGTCAAGGTGATCCAATAGATTTTCAAGTGGGCCTTTGCCGGTGACAATAGCTTGAACGAAGAATCCAAACATGGAGAACATAGCTAA
TCTTCCGTTCTTGATTTCCTTGACCTTGAGTTCCGCGAAAGTTGTTGGGTCATCTGCTAGAATGCTCTGAGCATGGACAAGGTTTGGGTTGCCCAAATAG
TCCAGCCCACCTTCACTGAAGATCTGGGCTCCAGCTTTGAACCATACTGGTTCTTTGAAGTCCACTTTTACCCATTTTTCAAGAACTTCTGGTGTAATGC
AACCAAAAGCTCCAAGCATGGCCCATCTCCCATGGATAACCTAGAATAATTAACACAATTTCAATTCATATCAATCCATCAACTATGTCTTAATACTAAA
TTAATCGTTACGAGTCTCAAATCTGTACATTTTCTATGGCGTGCTTCACTTTTTTGTTTTGTCCCAACAAAAATGATATTCCTCTGTCCTATTTTATGTG
ATATTCTTTCATTTTTATCCGTTAAAAAAAAATATCACTATAATTAGAAACAAGTTAGCTTTAAAATACCTCTTTTATCCTTAATGAGATGATTTTCAAC
TACACAATATCTAAGAAATGGTTTAGACCATTTTTTCTTCTTCTTAAAACACTGTGTCAAGTCAAATAGTGTCACATAAAATAAAACGAAAAAGATAATT
TTTTTATTTTTCAAACTTTTTTAGCTAAAAATGAATTTTAGTCACGCAAATGTCTGTTACTTATTTTAAACAAACTTACTAC