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Detailed information on CNT30728364


BLAST search results

BLAST vs Swiss-Prot:
sp|P27489|CB23_SOLLC, E-value = 6e-88

BLAST vs NONCODE:
NONBNAT003428, E-value = 9e-52

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639243Corchorus capsularisNymphaea colorata24.7918.3787.86173forward
CNT30381107Corchorus capsularisManihot esculenta66.7677.1583.05466forward
CNT30526626Corchorus capsularisPhaseolus vulgaris19.238.5190.3134forward
CNT30629897Corchorus capsularisVigna unguiculata25.6414.6183.8179forward
CNT30505375Corchorus capsularisNicotiana attenuata22.6456.4384.18158forward
CNT30710645Corchorus capsularisGlycine max39.6845.5683.75277forward
CNT30156649Corchorus capsularisPistacia vera57.0225.8685.68398forward
CNT30564424Corchorus capsularisActinidia chinensis43.757.3383.28305forward
CNT30238317Corchorus capsularisBrassica oleracea57.3141.9781.25400forward
CNT30510187Corchorus capsularisSolanum lycopersicum20.4916.2184.62143forward
CNT30309482Corchorus capsularisCamelina sativa27.3671.5482.2191forward
CNT3062573Corchorus capsularisArabidopsis lyrata50.1460.4582.86350forward
CNT30652643Corchorus capsularisRosa chinensis42.2646.1783.05295forward
CNT30207651Corchorus capsularisHelianthus annuus57.3134.7281.75400forward
CNT30620568Corchorus capsularisCajanus cajan29.2328.9885.78204forward
CNT30359477Corchorus capsularisLactuca sativa49.7158.0380.98347forward
CNT30574379Corchorus capsularisVitis vinifera38.1126.7385.34266forward
CNT30645477Corchorus capsularisCannabis sativa19.3435.4385.19135forward
CNT3022022Corchorus capsularisPopulus trichocarpa27.3641.7983.25191forward
CNT3035078Corchorus capsularisCucumis melo46.734.1781.29326forward
CNT30148203Corchorus capsularisBrachypodium distachyon48.8557.881.23341forward
CNT30556551Corchorus capsularisPanicum hallii46.755.2579.75326forward
CNT30726943Corchorus capsularisLupinus angustifolius51.4357.1785.24359forward

Expression of CNT30728364

Peptides detected in this lncRNA

>peptide 1 (50 aa)
LPSLERLKYCLVENFCNLIKIKNHYLLRLLLSASTSAAPQSITNYNIGSQ*

>peptide 2 (36 aa)
MENMASLPFLISLTLSSAKVTGSSARPRGSKYWPPG*

Sequence

>CNT30728364
CATTACCATCCCTAGAGAGATTGAAGTATTGCCTTGTAGAAAATTTTTGTAACTTGATAAAAATTAAAAACCATTACTTACTAAGACTTCTACTCTCAGC
ATCAACAAGCGCAGCACCACAATCAATCACAAATTACAACATTGGATCTCAGTGACAACAAAGTTCTCAAGTCTTTCAAAGTTCGTCAGAATCTACAAGC
ACATAGATACAAAGGTCAAAGGAGATATATAATTTACGATCCAGGCACAAACTTGGTAGCATAGACCCAAGCATTGTTGGCAACAGGGTTATCAAGATGG
ACCTTTTCCGGTAACGATGGCTTGAACGAAGAAACCGAACATGGAGAACATGGCAAGCCTACCATTCTTGATTTCTTTGACCTTGAGTTCAGCAAAAGTG
ACAGGGTCATCAGCAAGGCCAAGGGGGTCAAAGTATTGGCCACCAGGGTAAAGGTTATTGCCTTCTCCAACACCGGGCAGACCGTTGATTCTGAACCCTT
CAACGAGCCCCATTAGCACAACTTGGAAGCCGAGGACGGCCAGAATGCTTTGAGCATGAACAAGGTTTGGGTTGCCGAGGTAGTCCAACCCGCCTTCTGA
GAAGATTTGAGCTCCTGCCTTGAACCAAACGGGTTCCTTGAAGTCCACTTTAACCCATTTCTCAAGCACTTCTGGGGTGATGCACCCCAGTGCTCCCA