Detailed information on CNT30556551


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 6e-105

BLAST vs NONCODE:
NONBNAT003428, E-value = 5e-22

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671892Panicum halliiSetaria viridis38.8149.0497.38229forward
CNT30520579Panicum halliiSetaria italica72.240.2696.95426forward
CNT30728364Panicum halliiCorchorus capsularis55.2546.779.75326forward
CNT30156649Panicum halliiPistacia vera61.1923.4679.78361forward
CNT30564557Panicum halliiActinidia chinensis56.6183.582.04334forward
CNT30243592Panicum halliiAvena sativa72.8855.6389.3430forward
CNT30656512Panicum halliiTriticum dicoccoides3032.989.27177forward
CNT3013298Panicum halliiZea mays72.8849.8396.98430forward
CNT30652643Panicum halliiRosa chinensis55.5951.3381.1328forward
CNT30362471Panicum halliiSorghum bicolor36.6148.8799.07216forward
CNT30359477Panicum halliiLactuca sativa54.7554.0180.19323forward
CNT30370632Panicum halliiOryza glumipatula41.8632.0893.93247forward
CNT30574379Panicum halliiVitis vinifera41.8624.8282.59247forward
CNT3035078Panicum halliiCucumis melo48.1429.7784.15284forward
CNT30148203Panicum halliiBrachypodium distachyon54.7554.7588.54323forward
CNT30581304Panicum halliiEchinochloa crusgalli72.8845.9995.81430forward
CNT30496441Panicum halliiDigitaria exilis72.8852.8994.19430forward
CNT30604338Panicum halliiOryza punctata62.7154.7393.24370forward

Expression of CNT30556551

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRKPSTRPMRMTWNPSTARMLCACTRLGLPR*

>peptide 2 (33 aa)
MHPSAPSIAHRPWITSSALLRANASGSAESPAVS

Sequence

>CNT30556551
TACAATCCTGAATCGTGAGATGGCAATATTTGCATTCATTGGTGGTGGTACAATCGAGTAGTCTACAATGGTGGTCCGGCACGAAGAGGCCGCCGTCTAG
CTTAAGACCCGGGCGCGAACTTGGTGGCGTAGACCCAGGCGTTGTTGGCGACGGGGTCGTCGAGGCGGCCGTTCTTGATCTCCTTGACCTTGAGCTCGGC
GAAGGTGACGGGGTCGTCGGCGAGGCCCAGGGGGTCGAAGTACTGGCCGCCGGGGTAGAGGTTGTTGCCCTCGCCGACGCCGTCGAGGCCGTTGATGCGG
AAGCCCTCGACGAGGCCCATGAGGATGACCTGGAATCCGAGCACGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCGAGCCCGC
CCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCAGACGGGCTCCTTGAAGTCCACGCGCACCCACTTCTCGAGCACCTCCGGGGTGATGCATCCCAGCGC
GCCCAGCATCGCCCACCGCCCGTGGATCACCTCCAGCGCCCTGTTGCGCGCGAACGCCTCCGGGTCGGCGGAGAGCCCGGCCGTGTCCCA