Detailed information on CNT30221118


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 5e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30711010Hordeum vulgareGlycine max57.1821.2382.43239forward
CNT30243483Hordeum vulgareAvena sativa57.6632.3188.8241forward
CNT30656512Hordeum vulgareTriticum dicoccoides30.3823.6193.7127forward
CNT30652643Hordeum vulgareRosa chinensis27.7518.1587.93116forward
CNT30362471Hordeum vulgareSorghum bicolor27.7526.2487.93116forward
CNT3035078Hordeum vulgareCucumis melo28.9512.6887.6121forward

Expression of CNT30221118

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MAVPVTIACTKNPNIENMARRPFLISFTLSSAKVTGSSARPSGSLPSPTPSRPLMRNPSTRPMRRTWKPSTARMLCAWTRLGFP

>peptide 2 (49 aa)
FTLTVTIKNELSTLQHISNTHQKLNQKILQIFEFQGSHRPFVAIAHTWE*

Sequence

>CNT30221118
TTTTACTTTGACAGTAACCATCAAGAATGAGCTAAGCACATTGCAACATATAAGCAACACACATCAGAAATTAAACCAAAAAATCCTCCAAATTTTCGAA
TTTCAGGGATCACATCGACCATTCGTTGCTATTGCACACACATGGGAATAATTTACATTTTACAATGGCAGTGCCGGTGACGATAGCTTGCACGAAGAAC
CCGAACATAGAGAACATGGCAAGACGGCCATTCTTGATCTCCTTCACCTTAAGCTCCGCGAAGGTAACAGGGTCGTCGGCAAGGCCGAGCGGGTCGTTGC
CCTCGCCGACACCATCGAGACCGTTGATGCGGAACCCTTCAACAAGACCCATGAGAAGGACCTGGAAGCCAAGCACGGCAAGGATGCTCTGCGCGTGGAC
AAGGTTGGGGTTCCCAAG