« Back to Pistacia vera search


Detailed information on CNT30156649


BLAST search results

BLAST vs Swiss-Prot:
sp|P27489|CB23_SOLLC, E-value = 6e-113

BLAST vs NONCODE:
NONBNAT003428, E-value = 5e-49

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639243Pistacia veraNymphaea colorata16.526.9680.71254forward
CNT30516186Pistacia veraJuglans regia5.7822.8892.1389forward
CNT30728364Pistacia veraCorchorus capsularis25.8657.0285.68398forward
CNT30381107Pistacia veraManihot esculenta28.5972.8587.73440forward
CNT30526626Pistacia veraPhaseolus vulgaris10.8547.9985.63167forward
CNT30630022Pistacia veraVigna unguiculata5.9831.9486.9692forward
CNT30710645Pistacia veraGlycine max23.3359.0582.73359forward
CNT30564423Pistacia veraActinidia chinensis16.7640.9586.05258forward
CNT30238317Pistacia veraBrassica oleracea31.1950.3780.21480forward
CNT30510187Pistacia veraSolanum lycopersicum11.5720.1884.27178forward
CNT30243592Pistacia veraAvena sativa23.1346.0580.9356forward
CNT3062573Pistacia veraArabidopsis lyrata28.0774.6179.17432forward
CNT30652643Pistacia veraRosa chinensis19.1746.1785.76295forward
CNT30207651Pistacia veraHelianthus annuus31.7142.3679.92488forward
CNT30620568Pistacia veraCajanus cajan14.8832.5386.46229forward
CNT30359477Pistacia veraLactuca sativa23.1359.5382.02356forward
CNT30574379Pistacia veraVitis vinifera20.0831.0683.17309forward
CNT30645477Pistacia veraCannabis sativa13.8455.9183.1213forward
CNT3058205Pistacia veraAmborella trichopoda13.4530.2285.51207forward
CNT3022022Pistacia veraPopulus trichocarpa17.2858.2184.96266forward
CNT3035078Pistacia veraCucumis melo20.6633.3383.33318forward
CNT30148203Pistacia veraBrachypodium distachyon26.6469.4980.73410forward
CNT30496441Pistacia veraDigitaria exilis30.6758.0680.72472forward
CNT30556551Pistacia veraPanicum hallii23.4661.1979.78361forward
CNT30726943Pistacia veraLupinus angustifolius27.8168.1583.88428forward

Expression of CNT30156649

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MASLPFLISFTLSSANATGSSARPRGSKYWPPG*

>peptide 2 (32 aa)
MRVKKWVVVEILQGVVGIVRFDSANQMAAKDF*

>peptide 3 (30 aa)
MQLDHQQGQEGQSIGRRGRDRCPLRHQGDR*

>peptide 4 (29 aa)
MNVLYVLENESEEMGCGGNFARCGGDCEV*

>peptide 5 (51 aa)
MIISLRSGHKFGSVNPSIVSDRVLEVIQEVLQGTLAGNNSLDEETKHRKHG*

>peptide 6 (42 aa)
METTSLRGLTLDLVWPRNGVGLRVVLELSIDDIYYYFFVLKV*

>peptide 7 (37 aa)
MMESELKRVPSTSLCQVHTTIHFPVHTQTQLNSTEPT*

>peptide 8 (36 aa)
MHLNRQDQQQHQVRDDKDLNGIEFLQYTFHMKQEFE*

Sequence

>CNT30156649
TTAAATATGGAAAGAAAAAGTGTTAATATTATATAATCTGGTCACCATTATTCTGCCTTAAAATAACACCATTATTCTCACACTTTGCAATAGTTTGCTA
TTTCTCAAACAATGCATCTAAACAGACAAGATCAACAACAACATCAAGTTAGAGATGATAAGGATCTCAATGGGATAGAATTTTTACAATATACATTTCA
CATGAAACAAGAATTTGAGTAAATGATAATCAGTTTAAGATCCGGGCACAAATTTGGTAGCGTAAACCCAAGCATTGTTAGCGACAGGGTTCTCGAGGTG
ATCCAGGAGGTTCTCCAGGGGACCCTTGCCGGTAACAATAGCTTGGACGAAGAAACCAAACATCGAAAACATGGCTAGCCTTCCATTCTTGATCTCCTTC
ACCTTGAGTTCAGCAAATGCAACTGGATCATCAGCAAGGCCAAGAGGGTCAAAGTATTGGCCGCCGGGGTAGAGATCGTTGCCCTCTCCGACACCAGGGA
GACCGTTGATTCTGAACCCTTCTACGAGTCCCATGAGGACAACCTGGGATCCTAGGACTGCCAGGATGCTTTGAGCATGAACAAGGTTGGGGTTTCCCAA
GTAGTCAAGGCCTCCTTCTGAGAAAATCTGAGCTCCTGCCTTGAACCACACTGGCTCCTTGAAGTCTACTCTAACCCATTTCTCAAGAACTTCAGGGGTG
ATGCACCCTAGTGCTCCAAGCATAGCCCATCTCCCATGGATCACCTAATGAATAGTACAACAAAAATGTGACCAAGTATTCTGATCAATATTCCATACGG
TGTTTTAATTATTTTCAAACACACAACTATCTACTTTCAAGCAGTTGAAGGACAAATCTCGAGATTGATTAAAGAAGCTAGTTACAAAGTGAATCACAAA
ATTAAAAGAGAAGAACAAAAGAATCACCTCAAGAGCCCTGTTCCTGGCAAAGGCCTCAGGATCAGCAGACAAACCGGCAGTGTCCCATCCATAGTCCCCT
GGAAACTCACCAGTCAAGTATGATGGAGTCTGAGCTGAAAAGGGTCCCAAGTACTTCACTCTGTCAGGTCCATACCACAATTCATTTCCCTGTACACACA
CAAACTCAACTCAACTCAACTGAACCCACTTGAAGTACACAAATTTGCATGTGAATGGAAATAGAGTAGAACTAAAAATTACCATAGTGTACTTTGCATT
GCCCATGGAGACAACATCTCTGAGAGGGTTAACACTTGACCTGGTTTGGCCAAGAAACGGGGTAGGCCTCAGGGTGGTGCTAGAGCTTAGCATTGATGAC
ATTTACTACTATTTTTTTGTGTTGAAAGTTTAATGTTAATGTGTGTGTTGAACAGGTTGAAGAAAGGGAGATGAATGTTTTATATGTGTTAGAAAATGAG
AGTGAAGAAATGGGTTGTGGTGGAAATTTTGCAAGGTGTGGTGGGGATTGTGAGGTTTGATTCAGCCAATCAAATGGCCGCTAAGGATTTTTAAGTATCT
CCAACTCATATCCTTCTATCCACACATAATCTAGTTCTT