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Detailed information on CNT30362471


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 4e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671892Sorghum bicolorSetaria viridis48.8746.2597.22216forward
CNT30520579Sorghum bicolorSetaria italica48.8720.4297.22216forward
CNT30710645Sorghum bicolorGlycine max41.8630.4382.16185forward
CNT30221118Sorghum bicolorHordeum vulgare26.2427.7587.93116forward
CNT30564424Sorghum bicolorActinidia chinensis47.0639.180.77208forward
CNT30554485Sorghum bicolorOryza glaberrima22.1717.5995.9298forward
CNT30243592Sorghum bicolorAvena sativa48.4227.6891.12214forward
CNT30656512Sorghum bicolorTriticum dicoccoides39.8232.7189.2176forward
CNT30454234Sorghum bicolorSaccharum spontaneum32.5819.4698.61144forward
CNT30132148Sorghum bicolorLolium perenne36.4317.9993.79161forward
CNT3013298Sorghum bicolorZea mays48.8725.0398.61216forward
CNT30652643Sorghum bicolorRosa chinensis39.5927.3981.71175forward
CNT3035078Sorghum bicolorCucumis melo47.0621.884.13208forward
CNT30148203Sorghum bicolorBrachypodium distachyon48.4236.2787.38214forward
CNT30581304Sorghum bicolorEchinochloa crusgalli48.8723.196.76216forward
CNT30496441Sorghum bicolorDigitaria exilis48.8726.5794.91216forward
CNT30604338Sorghum bicolorOryza punctata36.8824.1191.41163forward
CNT30556551Sorghum bicolorPanicum hallii48.8736.6199.07216forward

Expression of CNT30362471

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MREHKNICIRSWYKCNVTRQTSSVQCPGTPPPCPASLRPWRPFLISLTLSSAKVTGSSARPKGSKYWPPG*

>peptide 2 (38 aa)
TEHTWIGWNGRSKLVASTTFLSSDERAQEYLHSFMVQM*

>peptide 3 (40 aa)
MRKPSTRPMRMTWKPSTARMLCACTRLGYLTRSGPYHRSLP

Sequence

>CNT30362471
ACGGAGCATACATGGATTGGATGGAATGGAAGATCAAAACTAGTGGCCAGTACGACGTTCCTGAGTTCTGATGAGAGAGCACAAGAATATTTGCATTCGT
TCATGGTACAAATGTAATGTCACAAGACAAACGAGTAGTGTACAATGTCCCGGCACGCCGCCGCCGTGTCCGGCTAGCTTAAGACCCTGGCGGCCGTTCT
TGATCTCCTTGACCTTGAGCTCGGCGAAGGTGACGGGGTCGTCGGCGAGGCCCAAGGGGTCGAAGTACTGGCCGCCGGGGTAGAGGTTGTTGCCCTCGCC
GACGCCGTCGAGGCCGTTGATGCGGAAGCCCTCGACGAGGCCCATGAGGATGACCTGGAAGCCGAGCACGGCGAGGATGCTCTGCGCGTGCACCAGGTTG
GGGTACTTGACGCGGTCCGGGCCGTACCACAGGTCGTTGCCC