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Detailed information on CNT30381107


BLAST search results

BLAST vs Swiss-Prot:
sp|P27489|CB23_SOLLC, E-value = 1e-111

BLAST vs NONCODE:
NONBNAT003428, E-value = 4e-63

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639243Manihot esculentaNymphaea colorata22.6814.5485.4137forward
CNT30728364Manihot esculentaCorchorus capsularis77.1566.7683.05466forward
CNT30526626Manihot esculentaPhaseolus vulgaris27.6547.9988.02167forward
CNT30629897Manihot esculentaVigna unguiculata33.9416.7383.9205forward
CNT30505375Manihot esculentaNicotiana attenuata25.8355.7188.46156forward
CNT30710934Manihot esculentaGlycine max67.8827.2282.93410forward
CNT30156649Manihot esculentaPistacia vera72.8528.5987.73440forward
CNT30564557Manihot esculentaActinidia chinensis53.8181.2582.15325forward
CNT30238317Manihot esculentaBrassica oleracea70.744.8182.2427forward
CNT30309482Manihot esculentaCamelina sativa28.1563.6783.53170forward
CNT3062573Manihot esculentaArabidopsis lyrata59.446281.62359forward
CNT30652643Manihot esculentaRosa chinensis52.4849.6183.28317forward
CNT30207651Manihot esculentaHelianthus annuus66.3934.8181.3401forward
CNT30620568Manihot esculentaCajanus cajan39.0733.5287.71236forward
CNT30359477Manihot esculentaLactuca sativa58.7759.3681.97355forward
CNT30574379Manihot esculentaVitis vinifera44.8727.2484.87271forward
CNT3022022Manihot esculentaPopulus trichocarpa36.0947.788.53218forward
CNT3035078Manihot esculentaCucumis melo52.9833.5481.25320forward
CNT30726943Manihot esculentaLupinus angustifolius61.4259.0883.56371forward

Expression of CNT30381107

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MASLPFLISFTFSSANVTGSSARPRGSKYLPPG*

>peptide 2 (31 aa)
MRNPSTSPIRTTWNPRTARMLCAWTRFGFPK*

Sequence

>CNT30381107
ATAAAATTAAAATGTACATTGGACTCCAACCGACACTCAAGTTTTTAAATCTGATAGTACAGGAAATTTTGATACCCTAGGTGGTAGAGTTTCCATTACA
AATCATCAATTTATGATCCAGGGACAAACTTTGTGGCATAGACCCAAGCATTATTAGCAACTGGGTTCTCCAGGGGACCCTTCCCAGTTACAATAGCTTG
AACAAAGAAACCAAACATTGAGAACATGGCTAGCCTTCCATTCTTGATCTCCTTCACCTTCAGCTCTGCAAATGTAACTGGATCATCTGCAAGGCCTAGA
GGGTCAAAGTACTTGCCGCCGGGGTAAAGATCATTGCCCTCTCCCACTCCAGGGAGACCATTGATGCGGAATCCTTCAACAAGTCCCATTAGGACCACTT
GGAATCCAAGAACTGCAAGGATGCTTTGTGCATGGACTAGGTTTGGGTTTCCCAAGTAGTCTAAGCCACCTTCTGAGAAGATTTGAGCTCCAGCTTTGAA
CCATACTGGTTCCTTGAAGTCCACCTTTACCCATTTCTCAAGTACTTCTGGTGTGATGCAGCCTAGTGCTCCAAGCATAGCCCATCTCCCATGAATCACC
TAAA