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Detailed information on CNT3062573


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 9e-111

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30728364Arabidopsis lyrataCorchorus capsularis60.4550.1482.86350forward
CNT30381107Arabidopsis lyrataManihot esculenta6259.4481.62359forward
CNT30710645Arabidopsis lyrataGlycine max62.8759.8781.87364forward
CNT30156649Arabidopsis lyrataPistacia vera74.6128.0779.17432forward
CNT30564424Arabidopsis lyrataActinidia chinensis51.6456.282.94299forward
CNT30238317Arabidopsis lyrataBrassica oleracea78.9347.9591.68457forward
CNT30309482Arabidopsis lyrataCamelina sativa40.2487.2795.28233forward
CNT30652643Arabidopsis lyrataRosa chinensis49.7445.0781.25288forward
CNT30207651Arabidopsis lyrataHelianthus annuus65.9833.1681.94382forward
CNT30359477Arabidopsis lyrataLactuca sativa67.765.5581.12392forward
CNT30574379Arabidopsis lyrataVitis vinifera37.6521.9183.03218forward
CNT3035078Arabidopsis lyrataCucumis melo49.7430.1981.25288forward

Expression of CNT3062573

Peptides detected in this lncRNA

>peptide 1 (34 aa)
PGANLVAKAHALLATGLSRWSRRFSKGPFPVTMA*

>peptide 2 (41 aa)
SRCKLSCESPRIVSNGVVEMVKEILQRTFSSNDGLNKEAKH*

Sequence

>CNT3062573
CTCCAGGTGCAAACTTAGTTGCGAAAGCCCACGCATTGTTAGCAACGGGGTTGTCGAGATGGTCAAGGAGATTCTCCAAAGGACCTTTTCCAGTAACGAT
GGCTTGAACAAAGAAGCCAAACATTGAGAACATAGCCAATCTTCCATTCTTGATCTCTTTCACCTTGAGCTCAGCAAAAGTAACTGGATCATCAGCGAGA
CCCAACGGGTCAAAGTATTGTCCACCGGGGTACAAGTCGTTTCCTTCGCCAACACCGTCAAGACCGTTGATGCGGAAACCTTCAACCAATCCCATGAGGA
TGACTTGGAAGCCAAGGACGGCTAAAATGCTCTGAGCATGGACTAGGTTTGGGTTGCCTAAGTAGTCCAAACCGCCTTCGGAGAAGATTTGTGAACCGGC
TTTGAACCAGACTGGTTCTTTGAAGTCCACACGGACCCACTTTTGAAGAACTTCAGGGGGTCTGCAGATAAACCGGCGGTGTCCCAACCATAATCGCCGG
GGAATTCTCCGGTGAGGTAAGACGGAGTTTGGACGGAAAAGGGTCCTAAGTACTTCACTCTATCTGGTCCATACCAAAG