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Detailed information on CNT30243592


BLAST search results

BLAST vs Swiss-Prot:
sp|P27523|CB23_HORVU, E-value = 1e-161

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671892Avena sativaSetaria viridis44.2473.2388.3342forward
CNT30520579Avena sativaSetaria italica68.6950.1987.95531forward
CNT30710645Avena sativaGlycine max43.2154.9383.53334forward
CNT30156649Avena sativaPistacia vera46.0523.1380.9356forward
CNT30221290Avena sativaHordeum vulgare15.7855.7195.9122forward
CNT30564423Avena sativaActinidia chinensis42.5652.2282.07329forward
CNT30656512Avena sativaTriticum dicoccoides27.1739.0394.76210forward
CNT30454234Avena sativaSaccharum spontaneum55.6358.1190.23430forward
CNT30132148Avena sativaLolium perenne61.5853.1895.38476forward
CNT3013298Avena sativaZea mays83.5774.8688.85646forward
CNT30652643Avena sativaRosa chinensis42.8251.881.57331forward
CNT30362471Avena sativaSorghum bicolor27.6848.4291.12214forward
CNT30359477Avena sativaLactuca sativa55.571.7481.12429forward
CNT30370632Avena sativaOryza glumipatula43.8644.0387.61339forward
CNT3035078Avena sativaCucumis melo40.7533.0284.13315forward
CNT30148203Avena sativaBrachypodium distachyon59.2577.6387.12458forward
CNT30581304Avena sativaEchinochloa crusgalli78.7865.1389.16609forward
CNT30496441Avena sativaDigitaria exilis77.8874.0587.71602forward
CNT30604338Avena sativaOryza punctata45.6752.2288.67353forward
CNT30556551Avena sativaPanicum hallii55.6372.8889.3430forward

Expression of CNT30243592

Peptides detected in this lncRNA

>peptide 1 (63 aa)
KFLNFEIASTIPSNLRACHYTQNSSLHFTTAVRHAVSAGLRPRHCWPLGRQGGRTGSPTDPCR*

>peptide 2 (33 aa)
MARRPFLISFTLSSANVTGSSARPRGSKYWPPG*

>peptide 3 (31 aa)
MRNPSTRPMRRTWKPSTARMLCAWTRLGFPR*

>peptide 4 (29 aa)
MAHRPWITSSALFLANASGSADSPAVSQP*

Sequence

>CNT30243592
AAATTTCTGAATTTTGAGATCGCCTCGACCATTCCTTCCAATTTGCGTGCGTGTCACTACACACAAAACAGTAGTTTACACTTTACAACGGCGGTACGCC
ATGCCGTGTCGGCCGGCCTAAGACCCAGGCATTGTTGGCCACTGGGTCGTCAAGGTGGTCGAACAGGTTCTCCAACGGACCCTTGCCGGTGACGATAGCC
TGGACGAAGAACCCAAACATAGAGAACATGGCGAGACGGCCATTCTTGATCTCCTTCACCTTAAGCTCCGCGAATGTGACTGGGTCGTCGGCGAGGCCGA
GGGGGTCGAAGTACTGGCCGCCGGGGTAGAGGTCGTTGCCCTCACCGACGCCGTCAAGGCCGTTGATGCGGAACCCCTCAACAAGGCCCATGAGAAGGAC
CTGGAAGCCGAGCACGGCGAGGATGCTCTGTGCGTGGACGAGGTTGGGGTTTCCGAGGTAGTCGAGACCGCCGTCGGAGAAGATCTGCGAGCCGGCCTTG
AACCAGACGGGCTCCTTGAACTCGACGCCCACCCACTTCTGGAGCACCTCGGGGAAGACGCACCCAAGAGCGCCGAGCATGGCCCACCGCCCGTGGATCA
CCTCGAGCGCCCTGTTCCTGGCGAATGCCTCCGGGTCGGCAGATAGCCCGGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGTTGAGGTACGACGG
CGTCTGCGCGGAGAAGGGGCCCAGGTACTTGACGCGGTCTGGACCGTACCACAAGTCGTTGCCCTGCGAGCGC