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Detailed information on CNT3035078


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 3e-91

BLAST vs NONCODE:
NONBNAT003428, E-value = 7e-41

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671892Cucumis meloSetaria viridis26.7354.685.49255forward
CNT30520579Cucumis meloSetaria italica41.7237.6282.91398forward
CNT30728364Cucumis meloCorchorus capsularis34.1746.781.29326forward
CNT30381107Cucumis meloManihot esculenta33.5452.9881.25320forward
CNT30526626Cucumis meloPhaseolus vulgaris17.5147.9982.04167forward
CNT30710645Cucumis meloGlycine max24.4238.3283.26233forward
CNT30156649Cucumis meloPistacia vera33.3320.6683.33318forward
CNT30221118Cucumis meloHordeum vulgare12.6828.9587.6121forward
CNT30564424Cucumis meloActinidia chinensis38.8969.7480.86371forward
CNT30238317Cucumis meloBrassica oleracea38.3638.4180.87366forward
CNT30510187Cucumis meloSolanum lycopersicum19.621.280.75187forward
CNT30243592Cucumis meloAvena sativa33.0240.7584.13315forward
CNT30309482Cucumis meloCamelina sativa20.4473.0380.51195forward
CNT3062573Cucumis meloArabidopsis lyrata30.1949.7481.25288forward
CNT30652643Cucumis meloRosa chinensis26.4239.4482.14252forward
CNT30207651Cucumis meloHelianthus annuus41.6134.4680.35397forward
CNT30362471Cucumis meloSorghum bicolor21.847.0684.13208forward
CNT30620568Cucumis meloCajanus cajan17.323.4483.64165forward
CNT30359477Cucumis meloLactuca sativa34.3854.8580.49328forward
CNT30574379Cucumis meloVitis vinifera24.9523.9280.25238forward
CNT3022022Cucumis meloPopulus trichocarpa17.5136.5483.23167forward
CNT30148203Cucumis meloBrachypodium distachyon33.6554.4181.93321forward
CNT30581304Cucumis meloEchinochloa crusgalli33.6534.3384.42321forward
CNT30496441Cucumis meloDigitaria exilis33.3339.1185.22318forward
CNT30556551Cucumis meloPanicum hallii29.7748.1484.15284forward
CNT30726943Cucumis meloLupinus angustifolius31.6648.0981.13302forward

Expression of CNT3035078

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLSNKIVNFRSRIPNWTYEDQKKTIREYTN*

>peptide 2 (31 aa)
MRNPSTRPMRTTWNPNTARMLWAWTKLGLPR*

>peptide 3 (29 aa)
MARRPFLISFTLSSAKVTGSSASPSGSKY*

>peptide 4 (45 aa)
MQPNAPNIAHLPWITCKIYHYLVLSKNFIFYLSNNLISASQTEAF*

Sequence

>CNT3035078
GTGAGAATTGATTTCCATTGATCCACTTTAATACTCAGCCATCTAATTATAATCACATCCATCCACACCAAAAAGAACACCCAGAGAACTACAAACAATT
TACACAACAAGCAAACAAACTTGTTCAATTTCAGTAATTACCGTGATATACTTATGAGCCAGGGGCAAACTTGGTGGCATAAACCCAAGCATTGTTAGCC
ACTGGGTTATCAAGGTGGTCAAGAAGAATCCAAACATAGAAAACATGGCAAGACGTCCATTCTTGATCTCCTTCACCTTGAGCTCCGCGAAGGTGACAGG
GTCATCAGCCAGTCCGAGTGGGTCAAAGTATTGACCGCCTGGGTAGAGGTCGTTGCCCTCGCCGACGCCATCGAGACCGTTGATGCGGAACCCTTCTACT
AGACCCATGAGGACGACTTGGAACCCCAACACGGCTAGAATGCTTTGGGCGTGGACCAAGTTGGGGTTGCCTAGGTAGTCTAGACCTCCTTCTGTGAAGA
TTTGGGCTCCTGCCTTGAACCATACTGGCTCCTTGAAGTCCACTTTAAGCCACTTTTCTAAGACTTCGGGTGTTATGCAACCCAATGCACCCAACATCGC
CCACCTCCCGTGGATTACCTGCAAAATTTATCATTATTTAGTTTTATCCAAGAATTTCATTTTTTATTTATCAAATAACTTAATCTCAGCATCCCAAACA
GAAGCTTTCTAACCCAACACATTAATTCTAGAATTTTGTAACTTAACTCGTTGCTCATATTTTAGTCATTGAATTTTAGATGCTACTTTATCTTCCTATT
CTCCACCTTGATTAAATTTGGTCCCGAAGTAACTCTGTTCTCTAAATTTTATGTTGAGTAACAAAATAGTCAATTTTAGAAGTAGAATACCAAATTGGAC
ATACGAAGATCAAAAGAAAACAATAAGAGAGTACACGAACTAAAATGAAGTACC