Detailed information on CNT30359477


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 6e-103

BLAST vs NONCODE:
NONBNAT003428, E-value = 7e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30728364Lactuca sativaCorchorus capsularis58.0349.7180.98347forward
CNT30381107Lactuca sativaManihot esculenta59.3658.7781.97355forward
CNT30526626Lactuca sativaPhaseolus vulgaris28.4348.8583.53170forward
CNT30630022Lactuca sativaVigna unguiculata19.941.3287.39119forward
CNT30710645Lactuca sativaGlycine max59.0358.0682.44353forward
CNT30156649Lactuca sativaPistacia vera59.5323.1382.02356forward
CNT30564423Lactuca sativaActinidia chinensis45.1542.8683.33270forward
CNT30238317Lactuca sativaBrassica oleracea65.5541.1380.36392forward
CNT30243592Lactuca sativaAvena sativa71.7455.581.12429forward
CNT30309482Lactuca sativaCamelina sativa16.3936.786.7398forward
CNT3062573Lactuca sativaArabidopsis lyrata65.5567.781.12392forward
CNT30652643Lactuca sativaRosa chinensis44.8241.9482.46268forward
CNT30620568Lactuca sativaCajanus cajan29.432586.36176forward
CNT3022022Lactuca sativaPopulus trichocarpa42.4755.5881.5254forward
CNT3035078Lactuca sativaCucumis melo54.8534.3880.49328forward
CNT30148203Lactuca sativaBrachypodium distachyon66.5667.4681.91398forward
CNT30556551Lactuca sativaPanicum hallii54.0154.7580.19323forward
CNT30726943Lactuca sativaLupinus angustifolius58.3655.5779.66349forward

Expression of CNT30359477

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MSPGHPRAPTGQNIGHRGKGCYRLQRLQDR*

>peptide 2 (36 aa)
MENIASLPFLISFTFNSANVTGSSASPNGSKYWPPG*

Sequence

>CNT30359477
AGACCGAAGATTTTCCTAATTTATATGAAGATACTCTTTCTTTCATAAATGTACACCATCTGGAATATAATTAAATTTTTATAATCTACAAATGTTTCTC
CCCAAACTTACAATTACAAGAACAAGGGAAAAGTTACATAGTCTATGACCCTGGCATTGTTAGCCACAGGATTGTCCAAATGGTCCAATAGGTTCTCCAA
TGGCCCCTTCCCTGTAACAATAGCTTGAACAAAAAACCCAAACATGGAGAACATTGCGAGCCTTCCATTCTTGATCTCCTTCACCTTCAACTCAGCAAAT
GTCACCGGGTCATCCGCGAGCCCCAACGGGTCAAAATATTGGCCACCGGGGTAAAGGTTGTTACCGTCTCCAACGCCTTCAAGACCGTTGATGCGGAACC
CCTCAACAAGACCCATCAACACCACCTGGAATCCGAGCACCGCCAGTATGCTTTGAGCATGGACAAGGTTCGGGTTTCCTAAGTAGTCCAGACCACCTTC
GGAGAAAATCTGGGCTCCGGCCTTGAACCAGACTGGCTCCTTGAAATCAACTTTCACCCACTTTTGGAGAACCTCCGGCGTGATACATCCGAATGCAC