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Detailed information on CNT30238317


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 3e-121

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30728364Brassica oleraceaCorchorus capsularis41.9757.3181.25400forward
CNT30381107Brassica oleraceaManihot esculenta44.8170.782.2427forward
CNT30156649Brassica oleraceaPistacia vera50.3731.1980.21480forward
CNT30309482Brassica oleraceaCamelina sativa27.9199.6392.86266forward
CNT3062573Brassica oleraceaArabidopsis lyrata47.9578.9391.68457forward
CNT30652643Brassica oleraceaRosa chinensis30.4345.3881.72290forward
CNT30207651Brassica oleraceaHelianthus annuus51.9442.9782.22495forward
CNT30359477Brassica oleraceaLactuca sativa41.1365.5580.36392forward
CNT30574379Brassica oleraceaVitis vinifera30.9529.6579.66295forward
CNT3035078Brassica oleraceaCucumis melo38.4138.3680.87366forward

Expression of CNT30238317

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRKPSTNPIRITWKPRTAKMLWAWTRFGLPK*

>peptide 2 (30 aa)
MLKPLSLSRILSVCFLFVVSFFFFAGLVEN*

>peptide 3 (34 aa)
TRKVMFISFQKDYILRLKKIKHQVQTLLQKPKHC*

Sequence

>CNT30238317
GAACAAGAAAGGTTATGTTCATATCATTTCAAAAGGATTACATTTTAAGACTTAAAAAAATCAAGCACCAGGTACAAACTTTGTTGCAAAAGCCCAAGCA
TTGTTAGCAACAGGGTTATCAAGATGGTCAAGGAGATTCTCTAAAGGACCCTTTCCTGTAACAATGGCTTGAACAAAGAAGCCAAACATTGAGAACATAG
CCAACCTTCCATTCTTGATTTCCTTCACCTTAAGCTCGGCGAAAGTAACCGGATCATCCGCGAGACCCAGCGGGTCAAAGTATTGCCCGCCCGGGTACAA
GTCATTGCCTTCACCAACACCATCAAGACCGTTGATGCGGAAACCTTCAACTAATCCCATTAGGATAACTTGGAAGCCAAGGACGGCTAAAATGCTTTGG
GCGTGGACTAGGTTTGGGTTGCCTAAGTAGTCCAAACCGCCTTCAGAGAAGATTTGTGAACCGGCTTTGAACCAGACCGGCTCTTTGAAGTCCACACGGA
CCCATTTCTGAAGAACTTCAGGGGTTATGCAACCTAATGCTCCCAACATTGCCCATCTCCCATGGATCACCTGTAACATGGTGATTAGTGATTAGTGTTT
ACCCAATTGAGTGAGTGAGAGTTAAGAGTCTAACCTCAAGAGCTCTGTTCTTGGCAAAGGCTTCAGGGTCTGCGGATAAACCAGCGGTGTCCCAACCATA
GTCTCCGGGAAACTCTCCGGTGAGTATACTTGGGAGATCCGAGAGAGACAGCATCACGAAGAGGGTTGAAGGTGGAGCCTTTAGTCTGTCCAAGAAATGG
TGTTGGGGTCAGAACACTGCTTGAGCTCATGAATGTTGAAGCCATTGAGTCTCTCTAGGATTTTGAGCGTTTGTTTTCTCTTTGTGGTGTCGTTCTTCTT
CTTTGCTGGTTTGGTGGAGAATTGATCTAAGGGAGTTTGAGTTTTAAAGCGAG