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Detailed information on CNT30623465


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43695|TBB3_MAIZE, E-value = 3e-46

BLAST vs NONCODE:
NONPOPT001271, E-value = 6e-54

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516889Daucus carotaJuglans regia37.1417.1983.65104forward
CNT30378644Daucus carotaArabidopsis thaliana89.2988.3480.4250forward
CNT30617295Daucus carotaSesamum indicum70.3648.0581.22197forward
CNT30728061Daucus carotaCorchorus capsularis87.8625.8481.71246forward
CNT30196749Daucus carotaPisum sativum81.4356.5881.58228forward
CNT30155931Daucus carotaPistacia vera90.3681.6187.35253forward
CNT30586804Daucus carotaMusa acuminata7025.3980.1196forward
CNT30553024Daucus carotaOryza glaberrima48.579.5280.15136forward
CNT30441907Daucus carotaAegilops tauschii63.9370.288.27179forward
CNT30313575Daucus carotaCamelina sativa7590.1382.38210forward
CNT3062349Daucus carotaArabidopsis lyrata91.0729.2883.53255forward
CNT3078381Daucus carotaBrassica juncea70.3673.7884.77197forward
CNT30614348Daucus carotaArabis alpina57.8615.3680.86162forward
CNT30721041Daucus carotaTriticum spelta37.1450.4981.73104forward
CNT30364046Daucus carotaSorghum bicolor72.534.8882.27203forward
CNT30621035Daucus carotaCajanus cajan81.0733.1980.62227forward
CNT30569889Daucus carotaVitis vinifera87.1451.2680.33244forward
CNT3054454Daucus carotaAmborella trichopoda41.4320.7182.76116forward
CNT30321935Daucus carotaAsparagus officinalis85.3611.2681.17239forward
CNT30116105Daucus carotaOryza nivara69.2926.2979.38194forward

Expression of CNT30623465

Peptides detected in this lncRNA

>peptide 1 (55 aa)
LTAGISEFECPETDIIESFIIKHHTLISIFNQLVDREGGIVRFHHSIRHFGRWKD*

Sequence

>CNT30623465
ACTTACAGCTGGGATTAGTGAGTTTGAGTGTCCGGAAACAGATATCATAGAGAGCTTCATTATCAAGCACCATACACTCATCAGCATTTTCAACCAGTTG
GTGGACAGAGAGGGTGGCATTGTAAGGTTCCACCACAGTATCAGACACTTTGGGCGATGGAAAGACTGAAAATGTCAACATCATCCGATCCGGATACTCT
TCCCTGATCTTTGATATCAATAGCGTTCCCATCCCCGATCCAGTACCTCCTCCCAATGAGTGACAGACTTGAAAACCTGC