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Detailed information on CNT30516889


BLAST search results

BLAST vs Swiss-Prot:
sp|P28551|TBB3_SOYBN, E-value = 4e-90

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675224Juglans regiaSetaria viridis42.4830.9385.21257forward
CNT30522713Juglans regiaSetaria italica29.9248.7982.87181forward
CNT30641079Juglans regiaNymphaea colorata26.6121.6784.47161forward
CNT30534291Juglans regiaEucalyptus grandis41.4939.479.28251forward
CNT30377262Juglans regiaArabidopsis thaliana25.6226.5483.23155forward
CNT30617295Juglans regiaSesamum indicum22.6433.4184.67137forward
CNT30728061Juglans regiaCorchorus capsularis33.5521.3281.77203forward
CNT30381383Juglans regiaManihot esculenta27.119.3385.37164forward
CNT30196749Juglans regiaPisum sativum33.5550.3787.19203forward
CNT30168132Juglans regiaPistacia vera33.0648.6683200forward
CNT3092760Juglans regiaSolanum tuberosum42.3136.9985.94256forward
CNT30291318Juglans regiaTriticum aestivum23.1442.0487.14140forward
CNT30223001Juglans regiaHordeum vulgare11.925.990.2872forward
CNT30562825Juglans regiaActinidia chinensis42.4846.5683.66257forward
CNT30586804Juglans regiaMusa acuminata32.5625.5281.73197forward
CNT30542792Juglans regiaBrassica napus19.1726.7381.9116forward
CNT30511058Juglans regiaSolanum lycopersicum21.9855.6584.96133forward
CNT30553024Juglans regiaOryza glaberrima39.0116.5379.66236forward
CNT30442409Juglans regiaAegilops tauschii32.5629.482.74197forward
CNT30253208Juglans regiaAvena sativa45.6222.9682.25276forward
CNT30313575Juglans regiaCamelina sativa28.9375.1180175forward
CNT3059902Juglans regiaArabidopsis lyrata26.2868.8383.65159forward
CNT3078381Juglans regiaBrassica juncea37.0283.982.14224forward
CNT30261872Juglans regiaBrassica rapa36.3624.8681.36220forward
CNT30614348Juglans regiaArabis alpina22.6412.9982.48137forward
CNT3015820Juglans regiaZea mays22.1529.3282.84134forward
CNT30608822Juglans regiaGossypium raimondii32.7329.5580.81198forward
CNT30203517Juglans regiaHelianthus annuus26.1214.0683.54158forward
CNT30623465Juglans regiaDaucus carota17.1937.1483.65104forward
CNT30681848Juglans regiaTriticum urartu43.9730.0684.59266forward
CNT30722533Juglans regiaTriticum spelta44.7947.5481.55271forward
CNT30341625Juglans regiaEragrostis tef37.5223.2883.7227forward
CNT30364046Juglans regiaSorghum bicolor33.5534.8883.74203forward
CNT30621035Juglans regiaCajanus cajan37.5233.1980.18227forward
CNT30369350Juglans regiaOryza glumipatula36.3631.6582.27220forward
CNT30422340Juglans regiaPapaver somniferum23.1416.5384.29140forward
CNT30569889Juglans regiaVitis vinifera32.7341.683.33198forward
CNT30706519Juglans regiaPrunus avium40.6629.6781.3246forward
CNT3033661Juglans regiaTheobroma cacao13.0637.9887.3479forward
CNT3054138Juglans regiaAmborella trichopoda18.5122.0984.82112forward
CNT3024644Juglans regiaPopulus trichocarpa31.49.2984.21190forward
CNT30328090Juglans regiaAsparagus officinalis41.1673.6782.73249forward
CNT30330123Juglans regiaDioscorea rotundata25.9515.4283.44157forward
CNT3099978Juglans regiaOryza rufipogon23.1417.2887.86140forward
CNT30575061Juglans regiaOryza barthii44.1329.3782.77267forward
CNT30117026Juglans regiaOryza nivara39.8335.8681.74241forward
CNT30333708Juglans regiaCynara cardunculus31.0723.2185.64188forward

Expression of CNT30516889

Peptides detected in this lncRNA

>peptide 1 (31 aa)
NCSLTLLNISWIDVEFPTKVDAIFRPLETVR*

>peptide 2 (50 aa)
MARVSSTHHVLGIPHLLSQLRDSEGNVLLGPTRGEWCKAHHEEMKTWEGN*

Sequence

>CNT30516889
GAACTGTTCGCTCACCCTCCTAAACATCTCCTGGATTGATGTAGAGTTCCCAACAAAAGTGGATGCCATCTTCAGACCCTTAGAGACGGTCAGGTAGCGG
CCATGGCGAGGGTCAGCAGCACACATCATGTTCTTGGCATCCCACATTTGCTGAGTCAGCTCCGGGACAGTGAGGGAAATGTATTGCTGGGACCCACGAG
AGGTGAGTGGTGCAAAGCCCACCATGAAGAAATGAAGACGTGGGAAGGGAATTAGATTGACAGCCAATTTCCGGAGGTCGGAATTCAGCTGGCCAGGGAA
CCTCAGGCAACATGTTACCCCACTCATAGTTGCAGAGATCAAATGGTTAAGGTCACCAACTGCAAAATGAAAGGGTCCTGAAGCAAATGTCATAAAGTGC
TTCATTGTCAAGAACCATGCATTCATCAGCATTCTCCACCAACTGGTGAACTGAGAGGGTGGCATTGTATGGCTCCACAACCGTGTCAGACACCTTTGGA
GAAGGGAAAACAGAGAACGTGAGCATCATCCTGTCAGGGTACTCCTCTCTAATCTTCGAAATCAGCAGGGTTCCCATGCCTGACCCTGTGCCTCCTCCAA
GTGAG