« Back to Aegilops tauschii search


Detailed information on CNT30441907


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673851Aegilops tauschiiSetaria viridis69.0286.787.5176forward
CNT30378644Aegilops tauschiiArabidopsis thaliana79.2271.3884.65202forward
CNT30617295Aegilops tauschiiSesamum indicum61.9638.5484.81158forward
CNT30728061Aegilops tauschiiCorchorus capsularis94.5125.3282.99241forward
CNT30381383Aegilops tauschiiManihot esculenta81.9611.981.34209forward
CNT30196749Aegilops tauschiiPisum sativum84.7153.680.09216forward
CNT30155931Aegilops tauschiiPistacia vera64.3152.987.8164forward
CNT30313575Aegilops tauschiiCamelina sativa60.3966.0981.82154forward
CNT3062349Aegilops tauschiiArabidopsis lyrata94.1227.5580.42240forward
CNT3078381Aegilops tauschiiBrassica juncea79.2275.6685.64202forward
CNT30614348Aegilops tauschiiArabis alpina38.439.2982.6598forward
CNT30623465Aegilops tauschiiDaucus carota70.263.9388.27179forward
CNT30684469Aegilops tauschiiTriticum urartu23.1412.2488.1459reverse complement
CNT30721041Aegilops tauschiiTriticum spelta36.0844.6683.792forward
CNT30364046Aegilops tauschiiSorghum bicolor87.8438.4984.38224forward
CNT30621035Aegilops tauschiiCajanus cajan94.935.3882.23242forward
CNT30595970Aegilops tauschiiOryza meridionalis28.2416.7188.8972forward
CNT30569889Aegilops tauschiiVitis vinifera83.1444.5482.55212forward
CNT3054454Aegilops tauschiiAmborella trichopoda54.92583.57140forward
CNT30116105Aegilops tauschiiOryza nivara78.4327.184200forward

Expression of CNT30441907

Peptides detected in this lncRNA

>peptide 1 (48 aa)
GCSKLQSAEADVVESLIVKHHALISILNKLVYRERSIVRFHHSVRHLR*

Sequence

>CNT30441907
GTGGGTGTAGCAAGCTTCAGAGTGCGGAAGCAGATGTCGTAGAGAGCCTCATTGTCAAGCACCATGCACTCATCAGCATTCTCAACAAGTTGGTGTACAG
AGAGCGTAGCATTGTAAGGTTCCACCACAGTGTCAGACACCTTCGGTGATGGGAAGACTGAGAATGTCAACATCATCCTATCTGGGTACTCCTCCCTGAT
CTTGGAGATGAGCAGTGTACCCATACCAGAACCAGTTCCTCCTCCCAGAGAGTGG