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Detailed information on CNT3054454


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674323Amborella trichopodaSetaria viridis24.6432.8684.06138forward
CNT30378644Amborella trichopodaArabidopsis thaliana2039.5885.71112forward
CNT30617295Amborella trichopodaSesamum indicum23.3931.9585.5131forward
CNT30728061Amborella trichopodaCorchorus capsularis23.9314.0885.07134forward
CNT30196749Amborella trichopodaPisum sativum18.7526.0581.9105forward
CNT30155931Amborella trichopodaPistacia vera25.5446.1384.62143forward
CNT30586804Amborella trichopodaMusa acuminata27.519.9580.52154forward
CNT30553024Amborella trichopodaOryza glaberrima27.510.7881.17154forward
CNT30441907Amborella trichopodaAegilops tauschii2554.983.57140forward
CNT30313575Amborella trichopodaCamelina sativa14.8235.6285.5483forward
CNT3059902Amborella trichopodaArabidopsis lyrata15.3637.2386.0586forward
CNT3078381Amborella trichopodaBrassica juncea2552.4383.57140forward
CNT30614348Amborella trichopodaArabis alpina24.6413.0883.33138forward
CNT30623465Amborella trichopodaDaucus carota20.7141.4382.76116forward
CNT30364046Amborella trichopodaSorghum bicolor24.6423.7184.06138forward
CNT30621035Amborella trichopodaCajanus cajan23.3919.1581.68131forward
CNT30321935Amborella trichopodaAsparagus officinalis28.577.5484.38160forward

Expression of CNT3054454

Peptides detected in this lncRNA

>peptide 1 (29 aa)
GVASLRVRKQISYRASLSRTMHSSAFSTS*

Sequence

>CNT3054454
AGGAGTTGCCAGCTTGAGGGTTCGGAAGCAGATATCATATAGGGCTTCATTGTCAAGGACCATGCACTCATCTGCATTCTCAACAAGCTGATGGACCGAT
AGGGTAGCATTATAGGGCTCAACCACAGTGTCTGAGACCTTTGGTGAGGGGAAAACAGAGAAGGATCTCTCTCATTTTCTCCTTTTGATCAGTAATTAAG
GGGTCTCTGGCTTTAAAATGAGGTTTCTGGCTCGGATCTGAGATTTTTGCACTGAAACTGGTGCTTAACGAGGGAATTTTGATAGGAAAATCAAGATTTA
GATTTTTCTTGGCTGAAAATGGAGATCTAAAATGTGCAGTATGGAAGAGGAAATAGAGTTATAGGCAGTAGAATACGGTTTTGGCCGTAAAGTGGACAAA
TTGAAAAGGAGATCTGGGATTTTAGCTTCAAGTTTTGAGAATGAGGCGGCTGAACCAATCTTTTGAACGGAAAATCAGGGCTTTAATGGCCGGCGATTAG
AGTTTCCGCCGAAGAACCGGTGCGACGGGGCGGGAAAATAGTCGGGATATGTGAGGCGAA