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Detailed information on CNT30617295


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMTRT001211, E-value = 1e-34

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674888Sesamum indicumSetaria viridis39.7623.0685.89163forward
CNT30522155Sesamum indicumSetaria italica21.229.985.0687forward
CNT30641079Sesamum indicumNymphaea colorata33.4118.4482.48137forward
CNT30534291Sesamum indicumEucalyptus grandis49.2731.7182.67202forward
CNT30516889Sesamum indicumJuglans regia33.4122.6484.67137forward
CNT30378644Sesamum indicumArabidopsis thaliana40.7359.0184.43167forward
CNT30728061Sesamum indicumCorchorus capsularis45.1219.4387.57185forward
CNT30381383Sesamum indicumManihot esculenta45.8510.787.77188forward
CNT30402401Sesamum indicumBeta vulgaris206.985.3782forward
CNT30196749Sesamum indicumPisum sativum21.7122.0884.2789forward
CNT30168132Sesamum indicumPistacia vera42.9342.8282.39176forward
CNT3092760Sesamum indicumSolanum tuberosum34.8820.6683.22143forward
CNT30291318Sesamum indicumTriticum aestivum38.7847.7588.68159forward
CNT30223001Sesamum indicumHordeum vulgare18.2926.9889.3375forward
CNT30562825Sesamum indicumActinidia chinensis50.9837.8684.21209forward
CNT30586804Sesamum indicumMusa acuminata45.8524.3579.79188forward
CNT30511058Sesamum indicumSolanum lycopersicum31.7154.3990130forward
CNT30553024Sesamum indicumOryza glaberrima38.7811.1380.5159forward
CNT30441907Sesamum indicumAegilops tauschii38.5461.9684.81158forward
CNT30253208Sesamum indicumAvena sativa49.2716.8181.68202forward
CNT30313575Sesamum indicumCamelina sativa28.2949.7982.76116forward
CNT3062349Sesamum indicumArabidopsis lyrata28.2913.3281.9116forward
CNT3078381Sesamum indicumBrassica juncea44.3968.1684.62182forward
CNT30614348Sesamum indicumArabis alpina37.814.6983.87155forward
CNT30608822Sesamum indicumGossypium raimondii20.9812.8490.786forward
CNT30209019Sesamum indicumHelianthus annuus46.8322.9983.85192forward
CNT30623465Sesamum indicumDaucus carota48.0570.3681.22197forward
CNT30681848Sesamum indicumTriticum urartu42.4419.6686.78174forward
CNT30722476Sesamum indicumTriticum spelta50.9831.2481.34209forward
CNT30364046Sesamum indicumSorghum bicolor48.5434.1982.91199forward
CNT30621035Sesamum indicumCajanus cajan31.9519.1580.92131forward
CNT30369350Sesamum indicumOryza glumipatula50.9830.0783.73209forward
CNT30424412Sesamum indicumPapaver somniferum42.6815.486.29175forward
CNT30570854Sesamum indicumVitis vinifera18.0536.8291.8974forward
CNT30706519Sesamum indicumPrunus avium50.9825.2184.21209forward
CNT3033661Sesamum indicumTheobroma cacao17.5634.6290.2872forward
CNT3054454Sesamum indicumAmborella trichopoda31.9523.3985.5131forward
CNT3024644Sesamum indicumPopulus trichocarpa408.0287.8164forward
CNT30328090Sesamum indicumAsparagus officinalis38.7847.0483.65159forward
CNT30332119Sesamum indicumDioscorea rotundata47.3230.5580.93194forward
CNT3099978Sesamum indicumOryza rufipogon44.6322.5982.51183forward
CNT30575061Sesamum indicumOryza barthii50.9822.9983.73209forward
CNT30117026Sesamum indicumOryza nivara41.9525.683.14172forward
CNT30333708Sesamum indicumCynara cardunculus38.0519.2685.26156forward

Expression of CNT30617295

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MKKCKRGNGIKLTASFRRSECGEFECPKTNII*

>peptide 2 (71 aa)
HGRGSEVTSMAWVSSTHHVLGIPHLLGQLWNSKCTVLLRTTGCQGSKSHHEKVQTGEWNQVDSKLSQVRVW*

Sequence

>CNT30617295
CATGGCCGAGGCAGTGAGGTAACGTCCATGGCGTGGGTCAGCAGCACACATCATGTTCTTGGCATCCCACATTTGTTGGGTCAGCTCTGGAACAGTAAGT
GCACGGTATTGCTGAGAACCACGGGATGTCAAGGGAGCAAATCCCACCATGAAAAAGTGCAAACGGGGGAATGGAATCAAGTTGACAGCAAGCTTTCGCA
GGTCAGAGTGTGGTGAGTTTGAGTGTCCTAAAACAAATATCATATAAGGCCTCATTGTCAAGCACCATGCACTCATCTGCATTCTCAACAAGTTGATGCA
CTGAAAGTGTGGCATTGTATGGCTCGACCACTGTATCTGAAACCTTAGGAGAAGGGAACACAGAGAATGTCAGCATCATCCTGTCGGGGTATTCTTCCCT
GATCTTTGAG