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Detailed information on CNT30313575


BLAST search results

BLAST vs Swiss-Prot:
sp|P18026|TBB2_MAIZE, E-value = 4e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674723Camelina sativaSetaria viridis78.9720.8979.35184forward
CNT30516889Camelina sativaJuglans regia75.1128.9380175forward
CNT30376989Camelina sativaArabidopsis thaliana73.8255.1387.79172forward
CNT30617295Camelina sativaSesamum indicum49.7928.2982.76116forward
CNT30728061Camelina sativaCorchorus capsularis87.9821.5382.93205forward
CNT30381383Camelina sativaManihot esculenta90.1311.9581.9210forward
CNT30402401Camelina sativaBeta vulgaris23.614.6390.9155forward
CNT30196749Camelina sativaPisum sativum79.8346.1585.48186forward
CNT30168132Camelina sativaPistacia vera94.8553.7784.16221forward
CNT30441907Camelina sativaAegilops tauschii66.0960.3981.82154forward
CNT3062349Camelina sativaArabidopsis lyrata10026.7596.14233forward
CNT3078381Camelina sativaBrassica juncea86.2775.2883.08201forward
CNT30614348Camelina sativaArabis alpina42.499.3886.8799forward
CNT30608822Camelina sativaGossypium raimondii94.4232.8485.45220forward
CNT30209019Camelina sativaHelianthus annuus65.6718.3280.39153forward
CNT30623465Camelina sativaDaucus carota90.137582.38210forward
CNT30721780Camelina sativaTriticum spelta43.3544.6984.16101forward
CNT30364046Camelina sativaSorghum bicolor74.6829.980.46174forward
CNT30621035Camelina sativaCajanus cajan63.9521.7887.92149forward
CNT3054454Camelina sativaAmborella trichopoda35.6214.8285.5483forward
CNT3024644Camelina sativaPopulus trichocarpa79.49.0583.78185forward
CNT30321935Camelina sativaAsparagus officinalis87.989.6680.98205forward

Expression of CNT30313575

Peptides detected in this lncRNA

>peptide 1 (40 aa)
VKSPIVQNHTLVSIFNKLMHRESSIVWLNNSVRDLRRRKH*

Sequence

>CNT30313575
CGTAAAGAGCCCCATTGTCCAAAACCATACACTCGTCAGCATTTTCAACAAGCTGATGCACAGAGAGAGTAGCATTGTATGGCTCAACAACAGTGTCAGA
GACCTTAGGAGAAGGAAACACTGAAAAAGTCATCATCATACGATCTGGATACTCATCTCTAATCTTAGAAATCAAAAGAGTTCCCATTCCAGATCCGGTT
CCTCCACCCAATGAATGACACACTTGGAAACCT