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Detailed information on CNT30116105


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMTRT001211, E-value = 2e-09

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Oryza nivaraOryza sativa19.6525.3193.79145forward
CNT30678154Oryza nivaraSetaria viridis23.5828.4887.93174forward
CNT30522155Oryza nivaraSetaria italica21.6818.296.25160forward
CNT30641160Oryza nivaraNymphaea colorata30.3531.0283.93224forward
CNT30378644Oryza nivaraArabidopsis thaliana27.9172.7980.1206forward
CNT30710178Oryza nivaraGlycine max15.7227.3686.21116forward
CNT30155931Oryza nivaraPistacia vera20.1948.0681.21149forward
CNT30390564Oryza nivaraTriticum turgidum18.4344.7491.91136forward
CNT30559885Oryza nivaraActinidia chinensis19.2427.187.32142forward
CNT30586804Oryza nivaraMusa acuminata26.4225.2689.74195forward
CNT30553024Oryza nivaraOryza glaberrima35.6418.4292.4263forward
CNT30441907Oryza nivaraAegilops tauschii27.178.4384200forward
CNT3059902Oryza nivaraArabidopsis lyrata17.3455.4182.81128forward
CNT3078381Oryza nivaraBrassica juncea27.174.9182200forward
CNT3041960Oryza nivaraChlamydomonas reinhardtii20.0543.489.86148forward
CNT30203517Oryza nivaraHelianthus annuus41.1927.0584.87304forward
CNT30623465Oryza nivaraDaucus carota26.2969.2979.38194forward
CNT30361420Oryza nivaraSorghum bicolor23.5840.9497.13174forward
CNT30621035Oryza nivaraCajanus cajan32.5235.0981.67240forward
CNT30595970Oryza nivaraOryza meridionalis13.6923.4390.1101forward
CNT30369370Oryza nivaraOryza glumipatula21.6824.1393.75160forward
CNT30569889Oryza nivaraVitis vinifera48.377585.71357forward
CNT3057379Oryza nivaraAmborella trichopoda13.1434.7790.7297forward
CNT3022498Oryza nivaraPopulus trichocarpa17.2123.2285.83127forward
CNT3036150Oryza nivaraCucumis melo15.3133.5384.96113forward
CNT3050576Oryza nivaraCucumis sativus15.4522.6683.33114forward

Expression of CNT30116105

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MLLSASVNSISSMPSPVYQCKKAFLRNMAVRLTASLRRSELSWPGKRRQQVTPLMVAEMRWLRSPKLGVVSLRVRKQMS*

Sequence

>CNT30116105
AGGGTATTGTGCCTATCATCAATCAAAGCTGAGTAATAATAATACATCAAGTAGAGTAGAGTAGCAGCTAGGAGTAATAATTAAGAACGACAACACTTGA
GAAGATAGCCTAAGCAACACAAGAAGTGAACCGAACCCCATTAGATTGGACATTGATATTGCAGTAGAGTAGTAATTAGTCCTGGAGATCAGCCTCTTCT
TCCTCATCCTCGTATTCACCCTCGTCGTCGGCGGTGGCGTCCTGGTACTGCTGGTACTCGGAGACGAGGTCGTTCATGTTGCTCTCGGCCTCGGTGAACT
CCATCTCGTCCATGCCCTCGCCCGTGTACCAGTGCAAGAAGGCCTTCCTGCGGAACATGGCGGTGAGGTTGACGGCGAGCTTGCGGAGGTCGGAGTTGAG
CTGGCCGGGGAAGCGGAGGCAGCAGGTGACGCCGCTCATGGTGGCGGAGATGAGGTGGTTGAGGTCGCCGAAGCTTGGGGTGGTGAGCTTGAGGGTGCGG
AAGCAGATGTCGTAGAGGGCCTCGTTGTCGAGCACCATGCACTCGTCGGCGTTCTCGACGAGCTGGTGGACGGAGAGGGTGGCGTTGTAGGGCTCCACCA
CGGTGTCGGAGACCTTGGGCGAGGGGAAGACGGAGAAGGTGAGCATCATCCGGTCGGGGTACTCCTCCCGGATCTTGGAGATGAGGAGCGTGCCCATGCC
GGACCCCGTGCCGCCGCCAAGCGAGTGGCAAACCTGGA