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Detailed information on CNT30728061


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMTRT001211, E-value = 1e-30

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516889Corchorus capsularisJuglans regia21.3233.5581.77203forward
CNT30376989Corchorus capsularisArabidopsis thaliana19.2258.6584.15183forward
CNT30617295Corchorus capsularisSesamum indicum19.4345.1287.57185forward
CNT30196749Corchorus capsularisPisum sativum26.1661.7984.34249forward
CNT30168132Corchorus capsularisPistacia vera25.1158.1583.26239forward
CNT30441907Corchorus capsularisAegilops tauschii25.3294.5182.99241forward
CNT30313575Corchorus capsularisCamelina sativa21.5387.9882.93205forward
CNT3062349Corchorus capsularisArabidopsis lyrata23.2125.3783.71221forward
CNT3078381Corchorus capsularisBrassica juncea24.0585.7783.41229forward
CNT30623465Corchorus capsularisDaucus carota25.8487.8681.71246forward
CNT30364046Corchorus capsularisSorghum bicolor25.1141.0784.52239forward
CNT30569889Corchorus capsularisVitis vinifera28.2656.5180.3269forward
CNT3054454Corchorus capsularisAmborella trichopoda14.0823.9385.07134forward
CNT30150328Corchorus capsularisBrachypodium distachyon7.2522.3386.9669forward

Expression of CNT30728061

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVADIRWFRSPTVKTNERKLIQHYPYQHKIQEHNQFFFYN*

>peptide 2 (49 aa)
LQSTNKIRSQFQILIELISFLSAKYKKKKKKKKTNIGADLTTTTKKTNR*

>peptide 3 (58 aa)
MLNSSFLILLILNIILGCCILVLLILRYKVRIELAREPKAACDTTHGCRYQMVQITNC*

Sequence

>CNT30728061
ATCTGCAGTCGACTAACAAAATTCGAAGTCAATTTCAAATATTGATAGAATTAATTTCATTCTTATCTGCCAAATATAAAAAAAAAAAAAAAAAAAAAAA
GACCAATATAGGTGCAGATTTGACTACTACTACCAAGAAAACAAACAGATAAAAGCAAAATGGAGAGATATAGACAAGACTACTAAATCGAATAGAGCAG
CAGGGCTAGAATTCAAACATAGAGAGAGAGTAATACAAACAACTTTTCACATATGTAAACTACTCAAACTAGCAGAAAATTGCCACTTTCCAACTCTCAA
AGCAGTATAACGAGGCATTACCACATCCCACAATAGAGTAGCATAGGGCCTTTAGTATTTAGATCTCTCACATCTCATGCTCAATAGTTCCTTCCTCATC
CTCCTCATACTCAACATCATCCTCGGCTGTTGCATCCTGGTACTGCTGATACTCAGATACAAGGTCAGAATTGAGTTGGCCAGGGAACCTAAGGCAGCAT
GTGACACCACTCATGGTTGCAGATATCAGATGGTTCAGATCACCAACTGTTAAAACCAATGAAAGGAAATTAATTCAGCATTATCCTTATCAACACAAGA
TTCAGGAACACAACCAATTTTTTTTTTACAATTAAAGGTTACTAGTTATTCACATAACAATCAATCTAACATTAGAAACTTACAGCTAGGAGTGGTCAAC
TTCAGAGTCCTGAAACAGATATCATATAGAGCCTCATTGTCCAGCACCATACACTCATCAGCATTCTCAACAAGCTGATGAACAGAAAGGGTGGCATTGT
ATGGCTCAACCACTGTATCTGAAACCTTAGGCGATGGGAAGACTGAGAAAGTGAGCATCATTCTATCAGGGTATTCTTCTCTTATCTTTGAAATCAACAA
GGTACCCATTCCAGAACCAGTTCCTCCACCCAGGGAGTGGCAAACTTGAAAA