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Detailed information on CNT30553024


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76FS2|TBB8_ORYSJ, E-value = 3e-142

BLAST vs NONCODE:
NONBNAT007651, E-value = 3e-59

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692356Oryza glaberrimaOryza sativa18.9159.7396.3270forward
CNT30675224Oryza glaberrimaSetaria viridis24.0941.486.92344forward
CNT30522155Oryza glaberrimaSetaria italica35.085791.02501forward
CNT30641079Oryza glaberrimaNymphaea colorata22.4843.290.65321forward
CNT30534291Oryza glaberrimaEucalyptus grandis11.3425.4383.95162forward
CNT30516889Oryza glaberrimaJuglans regia16.5339.0179.66236forward
CNT30377201Oryza glaberrimaArabidopsis thaliana12.9632.3487.03185forward
CNT30617295Oryza glaberrimaSesamum indicum11.1338.7880.5159forward
CNT30727252Oryza glaberrimaCorchorus capsularis13.3825.585.34191forward
CNT30629386Oryza glaberrimaVigna unguiculata10.4357.7588.59149forward
CNT30196370Oryza glaberrimaPisum sativum13.820.6783.76197forward
CNT30486254Oryza glaberrimaOlea europaea12.2545.6984175forward
CNT30708222Oryza glaberrimaGlycine max10.9938.9684.71157forward
CNT3092760Oryza glaberrimaSolanum tuberosum20.6642.6380.68295forward
CNT30291318Oryza glaberrimaTriticum aestivum17.7976.2886.22254forward
CNT30223001Oryza glaberrimaHordeum vulgare10.8555.7689.68155forward
CNT30390564Oryza glaberrimaTriticum turgidum12.0456.5887.79172forward
CNT30562825Oryza glaberrimaActinidia chinensis22.257.4382.65317forward
CNT30586804Oryza glaberrimaMusa acuminata14.526.8192.75207forward
CNT30542792Oryza glaberrimaBrassica napus8.427.6586.67120forward
CNT30511260Oryza glaberrimaSolanum lycopersicum10.7838.2181.82154forward
CNT30442409Oryza glaberrimaAegilops tauschii23.2549.5582.83332forward
CNT30253208Oryza glaberrimaAvena sativa37.6844.7681.23538forward
CNT3078381Oryza glaberrimaBrassica juncea15.3482.0281.74219forward
CNT30261872Oryza glaberrimaBrassica rapa27.1743.8481.7388forward
CNT305432Oryza glaberrimaZea mays12.2547.6886.86175forward
CNT3041960Oryza glaberrimaChlamydomonas reinhardtii12.1851.0388.51174forward
CNT30608822Oryza glaberrimaGossypium raimondii14.2230.383.25203forward
CNT30203517Oryza glaberrimaHelianthus annuus24.9331.6780.62356forward
CNT30623465Oryza glaberrimaDaucus carota9.5248.5780.15136forward
CNT30681848Oryza glaberrimaTriticum urartu24.9340.2385.96356forward
CNT30722476Oryza glaberrimaTriticum spelta24.7252.7782.15353forward
CNT30341625Oryza glaberrimaEragrostis tef25.9838.0582.48371forward
CNT30361420Oryza glaberrimaSorghum bicolor15.2751.2994.95218forward
CNT30621035Oryza glaberrimaCajanus cajan15.1331.5882.41216forward
CNT30595966Oryza glaberrimaOryza meridionalis16.3238.0198.28233forward
CNT30370114Oryza glaberrimaOryza glumipatula20.3835.53100291forward
CNT30569889Oryza glaberrimaVitis vinifera15.2745.885.78218forward
CNT30706519Oryza glaberrimaPrunus avium24.341.8679.54347forward
CNT3033661Oryza glaberrimaTheobroma cacao10.2270.1984.25146forward
CNT3054454Oryza glaberrimaAmborella trichopoda10.7827.581.17154forward
CNT3024558Oryza glaberrimaPopulus trichocarpa24.9319.5182.87356forward
CNT30322043Oryza glaberrimaAsparagus officinalis25.743.8582.56367forward
CNT30119164Oryza glaberrimaCitrus clementina11.2734.5580.75161forward
CNT3036150Oryza glaberrimaCucumis melo5.1121.6684.9373forward
CNT30332119Oryza glaberrimaDioscorea rotundata11.4125.6785.89163forward
CNT30150001Oryza glaberrimaBrachypodium distachyon4.6220.8990.9166forward
CNT3099978Oryza glaberrimaOryza rufipogon21.9938.7789.81314forward
CNT30575530Oryza glaberrimaOryza barthii27.1742.9794.59388forward
CNT30116105Oryza glaberrimaOryza nivara18.4235.6492.4263forward
CNT30333708Oryza glaberrimaCynara cardunculus12.9622.8484.32185forward

Expression of CNT30553024

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MRSGYSSLILEMSSVPMPDPVPPPSEWHTWNPALTKLHVTHVTTYSLRIKTNQLRITNLG*

>peptide 2 (39 aa)
MTTNEGMQQVVAHSTQAAAVAADTATAHCVFVPIEIYVA*

>peptide 3 (81 aa)
MFLASHICCVSSGTVSALYCCDPRDVSGANPTMKKCSRGNGIRFTASFLRSEFSCPGNRRQHVTPLIVADIRSRCMIASLT*

>peptide 4 (66 aa)
MLLSASVNSISSIPSLVYQWRKALRRNMAVNCSLTRRNISWMEVELPTGGMSQTLDLTLLGIHSTK*

Sequence

>CNT30553024
ATTTAGTCCCATGAAAATGAATAGATAACATTTCCTAACATATACAGAGATAGAAAAGAGTAAACCACGGTTCATGTACATGAATAAACAAATTTAGACA
GACAAGAAACCTGAACAACGATGACAACGAACGAAGGCATGCAACAAGTAGTAGCGCACAGTACACAAGCAGCAGCAGTAGCAGCAGACACGGCAACGGC
ACATTGTGTGTTTGTACCGATCGAAATATATGTAGCGTAGCGTAGCAGAGAGCCAGAGAGGCAAAGCGGGAGGGATCGATCGATCGATCGATCAGGCCTC
GTCGGCGGCGGCGGCGTCGTCCTCCTCGTCGTAGTCGTCCTCGGCGGTGGCGTCCTGGTACTGCTGGTACTCGGCGACGAGGTCGTTCATGTTGCTCTCG
GCCTCGGTGAACTCCATCTCGTCCATTCCCTCGCTGGTGTACCAGTGGAGGAAGGCCTTGCGGCGGAACATGGCGGTGAACTGCTCGCTGACGCGGCGGA
ACATCTCCTGGATGGAGGTGGAGTTGCCGACGGGGGGGATGTCGCAGACGCTGGACTTGACGTTGTTGGGGATCCACTCCACGAAGTAGGACGAGTTCTT
GTTCTGCACGTTGATCATCTGCTCGTCCACCTCCTTGGTGCTCATCCTGCCCCGGAACATGGCGGACGCCGTGAGGTAGCGGCCGTGGCGCGGGTCGGCG
GCGCACATCATGTTCTTGGCGTCCCACATCTGCTGCGTCAGCTCCGGCACCGTCAGCGCCCTGTACTGCTGCGACCCGCGCGACGTCAGCGGCGCGAACC
CCACCATGAAGAAGTGCAGCCGCGGGAACGGGATCAGGTTCACCGCCAGCTTCCTCAGGTCCGAGTTCAGCTGCCCCGGGAACCGCAGGCAGCACGTCAC
CCCGCTCATCGTCGCCGATATCAGGTCAAGGTGCATGATCGCTTCGCTTACATGATGGGTTGGTGAGCTTGAGGGTGCGGAAGCAGATGTCGTAGAGGGC
CTCGTTGTCGAGGACCATGCACTCGTCGGCGTTCTCGACGAGCTGGTGCACGGACAGCGTCGCGTTGTAGGGCTCCACCACGGTGTCCGACACCTTGGGC
GACGGGAACACGGAGAAGGTCAGCATCATGCGGTCCGGGTACTCCTCCCTGATCTTGGAGATGAGCAGCGTGCCCATGCCCGACCCCGTGCCTCCTCCCA
GCGAGTGGCACACCTGGAATCCTGCACTCACAAAATTGCATGTCACTCACGTTACTACATACTCCCTCCGTATCAAAACAAACCAACTTAGGATAACCAA
CTTAGGATGAGATATTTCCTAGTATAATGAATTTGGATATAAGCCAGGAAATGTCCCATTCTATCTTTGGTTAGTTTATTTTGGGATAAAGGAAGTAGTT
CATTCATACATGCTCTTGTATAATGCCC