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Detailed information on CNT30586804


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76FS3|TBB6_ORYSJ, E-value = 3e-117

BLAST vs NONCODE:
NONBNAT004015, E-value = 5e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Musa acuminataOryza sativa22.9330.8990.96177forward
CNT30678154Musa acuminataSetaria viridis51.1764.6588.61395forward
CNT30522155Musa acuminataSetaria italica30.0526.3992.67232forward
CNT30641160Musa acuminataNymphaea colorata56.7460.6688.36438forward
CNT30534291Musa acuminataEucalyptus grandis21.526.0683.13166forward
CNT30516889Musa acuminataJuglans regia25.5232.5681.73197forward
CNT30377262Musa acuminataArabidopsis thaliana20.2126.7187.18156forward
CNT30617295Musa acuminataSesamum indicum24.3545.8579.79188forward
CNT30727252Musa acuminataCorchorus capsularis21.1121.7683.44163forward
CNT30381383Musa acuminataManihot esculenta21.59.4582.53166forward
CNT30629386Musa acuminataVigna unguiculata13.0839.1584.16101forward
CNT30196749Musa acuminataPisum sativum25.3948.6480.61196forward
CNT30486254Musa acuminataOlea europaea11.2722.7289.6687forward
CNT30708222Musa acuminataGlycine max16.8432.2686.15130forward
CNT3092760Musa acuminataSolanum tuberosum35.2339.3181.99272forward
CNT30291318Musa acuminataTriticum aestivum30.0569.6785.78232forward
CNT30223001Musa acuminataHordeum vulgare19.1753.2487.16148forward
CNT30390564Musa acuminataTriticum turgidum36.492.4381.85281forward
CNT30562825Musa acuminataActinidia chinensis52.9874.0981.66409forward
CNT30542792Musa acuminataBrassica napus12.3121.8984.2195forward
CNT30511260Musa acuminataSolanum lycopersicum37.6972.2181.44291forward
CNT30553024Musa acuminataOryza glaberrima26.8114.592.75207forward
CNT30442409Musa acuminataAegilops tauschii26.4230.4584.31204forward
CNT30253208Musa acuminataAvena sativa26.4216.9782.35204forward
CNT3078381Musa acuminataBrassica juncea25.9174.9184200forward
CNT30261872Musa acuminataBrassica rapa29.425.6583.26227forward
CNT30614070Musa acuminataArabis alpina21.8912.2382.25169forward
CNT301973Musa acuminataZea mays22.9374.0688.7177forward
CNT3041960Musa acuminataChlamydomonas reinhardtii21.6348.9792.81167forward
CNT30608822Musa acuminataGossypium raimondii25.2629.180195forward
CNT30203517Musa acuminataHelianthus annuus26.318.0684.73203forward
CNT30623465Musa acuminataDaucus carota25.397080.1196forward
CNT30681848Musa acuminataTriticum urartu30.0526.2186.64232forward
CNT30722533Musa acuminataTriticum spelta26.4235.7984.31204forward
CNT30341625Musa acuminataEragrostis tef22.0217.4488.82170forward
CNT30361420Musa acuminataSorghum bicolor22.841.4191.48176forward
CNT30621035Musa acuminataCajanus cajan27.0730.5683.25209forward
CNT30595966Musa acuminataOryza meridionalis20.3425.6192.36157forward
CNT30369370Musa acuminataOryza glumipatula34.0739.6790.11263forward
CNT30569889Musa acuminataVitis vinifera26.4242.8683.33204forward
CNT30706519Musa acuminataPrunus avium30.0527.9981.9232forward
CNT3033661Musa acuminataTheobroma cacao16.5861.5485.94128forward
CNT3054454Musa acuminataAmborella trichopoda19.9527.580.52154forward
CNT3022498Musa acuminataPopulus trichocarpa22.5431.8186.21174forward
CNT30322043Musa acuminataAsparagus officinalis26.8124.7386.47207forward
CNT3036150Musa acuminataCucumis melo13.631.1685.71105forward
CNT30332119Musa acuminataDioscorea rotundata17.3621.187.31134forward
CNT30150001Musa acuminataBrachypodium distachyon9.5923.4290.5474forward
CNT3099978Musa acuminataOryza rufipogon29.6628.2789.08229forward
CNT30575530Musa acuminataOryza barthii29.6625.3690.39229forward
CNT30116105Musa acuminataOryza nivara25.2626.4289.74195forward
CNT30333708Musa acuminataCynara cardunculus26.4225.1979.9204forward
CNT3050576Musa acuminataCucumis sativus15.824.2581.97122forward

Expression of CNT30586804

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MFLASHICCVSSGMVRARYCCDPREVSGVNPTMKKWSLRVLKQMS*

>peptide 2 (51 aa)
MHSSAFSTSWCTDSVALYGSTTVSDTLGDGNTEKVSIIRSGYSSRILDISSV

>peptide 3 (43 aa)
MKAWTFSSPQRHHRRLPPRRRRPRRPGTAGTRRRGRSCCSRPR*

>peptide 4 (72 aa)
MLLSASVNSISSMPSPVYQCKKALRRNMTVNCSDTRLNISWMEEEFLFCTAIICSSTSLVLILPRNMAEAVR*

Sequence

>CNT30586804
TAGTCGATGCGTAGAAATCGATGACAGAGCTCGACAATACCAATCACACACTGAAGGAAAGTAAACCAGCAGCTCATCTGCCTGCATACATGCATGCATG
AAAGCGTGGACTTTTAGTTCTCCTCAACGTCATCACCGTAGGCTTCCTCCTCGTCGGCGTCGGCCACGGCGTCCTGGTACTGCTGGTACTCGGAGACGAG
GTCGTTCATGTTGCTCTCGGCCTCGGTGAACTCCATCTCGTCCATGCCTTCCCCGGTGTACCAGTGCAAGAAGGCCTTGCGGCGGAACATGACGGTGAAC
TGCTCCGACACGCGCTTGAACATCTCCTGGATGGAGGAGGAGTTCTTGTTCTGCACCGCGATCATCTGCTCGTCCACCTCCTTGGTGCTCATCCTGCCGC
GGAACATGGCGGAGGCGGTGAGGTAGCGGCCGTGGCGGGGGTCGGCAGCGCACATCATGTTCTTGGCGTCCCACATCTGCTGCGTGAGCTCGGGGATGGT
GAGGGCGCGGTACTGCTGCGACCCGCGGGAGGTCAGCGGCGTGAATCCCACCATGAAGAAGTGGAGCTTGAGGGTCCTGAAGCAGATGTCATAGAGGGCC
TCGTTGTCGAGCACCATGCACTCGTCGGCGTTCTCCACCAGCTGGTGCACCGACAGCGTCGCGTTGTACGGCTCCACCACCGTGTCCGACACCTTGGGCG
ACGGGAACACCGAGAAGGTCAGCATCATCCGATCCGGGTACTCCTCCCGGATCTTGGATATCAGCAGCGTCC