« Back to Sorghum bicolor search


Detailed information on CNT30364046


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMTRT001211, E-value = 1e-19

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674723Sorghum bicolorSetaria viridis37.4624.7495.41218forward
CNT30516889Sorghum bicolorJuglans regia34.8833.5583.74203forward
CNT30378644Sorghum bicolorArabidopsis thaliana3980.2185.02227forward
CNT30617295Sorghum bicolorSesamum indicum34.1948.5482.91199forward
CNT30728061Sorghum bicolorCorchorus capsularis41.0725.1184.52239forward
CNT30196749Sorghum bicolorPisum sativum36.9453.3583.26215forward
CNT30155931Sorghum bicolorPistacia vera41.0777.182.85239forward
CNT30441907Sorghum bicolorAegilops tauschii38.4987.8484.38224forward
CNT30313575Sorghum bicolorCamelina sativa29.974.6880.46174forward
CNT3078381Sorghum bicolorBrassica juncea3985.0286.78227forward
CNT30614348Sorghum bicolorArabis alpina21.9912.1385.94128forward
CNT30623465Sorghum bicolorDaucus carota34.8872.582.27203forward
CNT30721041Sorghum bicolorTriticum spelta19.9356.3192.24116forward
CNT30621035Sorghum bicolorCajanus cajan36.631.1482.16213forward
CNT3054454Sorghum bicolorAmborella trichopoda23.7124.6484.06138forward

Expression of CNT30364046

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MGHEGGTLAVVTRQQYERGHQTHQGLPALEPPGFTLSQPLTFHLLARPPRPRTRPHHRQTSSCSGHLSSARQPPWCSSSHGTWPRR*

>peptide 2 (32 aa)
GSISSIVPKARFHSTRKIQASTATEWATRVVR*

Sequence

>CNT30364046
TGGCAGCATAAGTAGCATCGTACCAAAAGCAAGGTTCCATAGCACAAGGAAAATACAAGCATCAACAGCGACAGAATGGGCCACGAGGGTGGTACGCTAG
CAGTAGTAACACGGCAACAATACGAAAGGGGACACCAAACCCATCAAGGTCTGCCTGCCCTAGAACCACCAGGCTTCACACTATCACAGCCTCTCACATT
TCATCTCCTTGCACGTCCTCCTCGTCCTCGTACTCGCCCTCATCATCGGCAGACGAGTTCTTGTTCTGGACATTTATCATCTGCTCGTCAACCTCCTTGG
TGCTCATCTTCCCACGGAACATGGCCGAGGCGGTGAGCTTAAGAGTCCTGAAGCAAATGTCATAGAGGGCCTCGTTGTCAAGAACCATACACTCATCGGC
ATTCTCAACCAACTGATGAACAGAAAGGGTAGCATTGTATGGCTCAACCACGGTATCAGATACTTTCGGTGAGGGGAAAACTGAGAATGTCAGCATCATG
CGGTCAGGGTACTCCTCCCTGATCTTTGAGATCAACAGTGTACCCATACCAGATCCAGTACCACCACCAAGGGAGTGGCATA