Detailed information on CNT30569889


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41782|TBB4_MAIZE, E-value = 8e-71

BLAST vs NONCODE:
NONPOPT001271, E-value = 6e-52

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673851Vitis viniferaSetaria viridis34.8781.7786.14166forward
CNT30516889Vitis viniferaJuglans regia41.632.7383.33198forward
CNT30372781Vitis viniferaArabidopsis thaliana30.0449.4881.12143forward
CNT30728061Vitis viniferaCorchorus capsularis56.5128.2680.3269forward
CNT30196749Vitis viniferaPisum sativum45.854.0980.28218forward
CNT30155931Vitis viniferaPistacia vera51.4779.0384.08245forward
CNT30586804Vitis viniferaMusa acuminata42.8626.4283.33204forward
CNT30553024Vitis viniferaOryza glaberrima45.815.2785.78218forward
CNT30441907Vitis viniferaAegilops tauschii44.5483.1482.55212forward
CNT3062349Vitis viniferaArabidopsis lyrata47.0625.7279.46224forward
CNT3078381Vitis viniferaBrassica juncea36.9765.9281.82176forward
CNT30614348Vitis viniferaArabis alpina20.89.3882.8399forward
CNT30203517Vitis viniferaHelianthus annuus77.9433.0181.94371forward
CNT30623465Vitis viniferaDaucus carota51.2687.1480.33244forward
CNT30681999Vitis viniferaTriticum urartu37.8256.681.67180forward
CNT30621035Vitis viniferaCajanus cajan47.2732.8980225forward
CNT30370171Vitis viniferaOryza glumipatula31.9317.9281.58152forward
CNT3057379Vitis viniferaAmborella trichopoda21.2236.287.13101forward
CNT30322043Vitis viniferaAsparagus officinalis31.9318.1686.18152forward
CNT30116105Vitis viniferaOryza nivara7548.3785.71357forward

Expression of CNT30569889

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MLRRSWWWRSNGFKLTAWIGELESSEANVVESFIVEDHALVGVLHELVDGEGGVVGLNDGVRDLG*

>peptide 2 (65 aa)
VSSGMVRARYCCDPRDVRGAKPTMKKCNRGNGIRLTASFRRSELSWPGKRRQHVTPLMVVEIKWF*

Sequence

>CNT30569889
GTCAGCTCCGGGATGGTGAGGGCCCGGTACTGCTGTGATCCACGCGACGTCAGGGGTGCAAAACCCACCATGAAGAAGTGTAATCGCGGGAATGGGATAA
GATTGACCGCCAGTTTTCGGAGGTCGGAGTTGAGCTGGCCGGGGAAGCGGAGGCAGCATGTTACGCCGCTCATGGTGGTGGAGATCAAATGGTTTTAAAC
TTACAGCTTGGATTGGTGAGCTTGAGAGTTCGGAAGCAAATGTCGTAGAGAGCTTCATTGTCGAGGACCATGCACTCGTCGGCGTTCTCCACGAGTTGGT
GGACGGAGAGGGTGGCGTTGTAGGGCTCAACGACGGTGTCAGAGACCTTGGGTGAAGGGAAGACGGAGAAAGTGAGCATCATCCGATCAGGGTATTCTTC
TCTGATCTTGGATATAAGCAGGGTTCCCATTCCGGATCCAGTGCCGCCGCCGAGGGAATGGCAAATCTGGAAGCCT