Detailed information on CNT30614348


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516889Arabis alpinaJuglans regia12.9922.6482.48137forward
CNT30378644Arabis alpinaArabidopsis thaliana15.8359.0191.62167forward
CNT30617295Arabis alpinaSesamum indicum14.6937.883.87155forward
CNT30196749Arabis alpinaPisum sativum16.2142.4387.13171forward
CNT30168132Arabis alpinaPistacia vera10.5227.0183.78111forward
CNT30441907Arabis alpinaAegilops tauschii9.2938.4382.6598forward
CNT30313575Arabis alpinaCamelina sativa9.3842.4986.8799forward
CNT3078381Arabis alpinaBrassica juncea15.2660.390.68161forward
CNT30204946Arabis alpinaHelianthus annuus12.2334.487.6129forward
CNT30623465Arabis alpinaDaucus carota15.3657.8680.86162forward
CNT30364046Arabis alpinaSorghum bicolor12.1321.9985.94128forward
CNT30621035Arabis alpinaCajanus cajan14.1221.7884.56149forward
CNT30569889Arabis alpinaVitis vinifera9.3820.882.8399forward
CNT3054454Arabis alpinaAmborella trichopoda13.0824.6483.33138forward
CNT30150001Arabis alpinaBrachypodium distachyon7.492587.3479forward

Expression of CNT30614348

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MVYEVLDIHMTIIQKVLIQCCSLRFQIEQYCDTK*

>peptide 2 (38 aa)
MDLTARGSEFKSPEADIIQGLVIKNHTLICILNKLMNR*

>peptide 3 (78 aa)
MKTREWDQIHSKLTQVGVKLTREPQTASHTRHSSRDQVVQITDCRQRMNQVCKPQTHTTYNMLNKSTTSIKLPEIHML*

Sequence

>CNT30614348
GTCAAAACTTAGCAAAGGATTCACAATTCACAGGCAATTTTAAAGAGAATATTTAATCAGAAAGATCCAAGAGAAATGTCGAAAAAACCGGAATTAAGAA
CAAAAGTCTAAGAAATCCAGATTTTGTCAATACAAGCATAAAAATCCTGCAACTGGAAGTTGAGGTTTAAGTAGCAAACGACTAAATTGATAAAAGGGTG
GTTTTTACTAGATTACTCTCAGTACTCTTCCTCTTGTTGGTAATCAGCTTCTTCCTCATCCTCGTACTCACCTTCCTCGTCTGCTGTAGCGTCTTGGTAC
TGCTGGTACTCTGAAACCAAATCGTTCATGTTACTCTCAGCTTCTGTGAACTCCATCTCGTCAGAGGAGCAAAACCCACCATGAAGAAATGAAGACGAGG
GAATGGGATCAGATTCACAGCAAGCTTACGCAGGTCGGAGTTAAGCTGACCAGGGAACCTCAAACAGCAAGTCACACCAGACATAGTAGCAGAGATCAAG
TGGTTCAAATCACCGACTGCAGACAGAGAATGAACCAAGTATGTAAGCCACAGACACATACAACATACAACATGTTAAACAAGAGCACCACATCAATAAA
GCTTCCAGAAATTCATATGTTATAAACCAAACAGTACACTTCCACAATCATTCTCATTCTCTTCCATACTAGTAAAGCATTCTGCATATCCCTAATGGTA
TACGAAGTCCTAGATATTCACATGACAATTATCCAGAAAGTATTGATCCAATGTTGCAGCTTAAGGTTTCAAATCGAACAGTATTGTGATACAAAATAAT
CAAATGTTCAAGATCTAGCAAGCATTATAAGCATAGAACAAACGAGTAACCAAAAGATTTGTGAATTGGATAATGGATCTTACAGCTAGGGGTAGTGAGT
TTAAGAGTCCTGAAGCAGATATCATACAAGGCCTCGTTATCAAGAACCATACACTCATCTGCATTCTCAACAAGTTGATGAACAGATAAAGTAGCGTTAT
AAGGCTCAACAACAGTATCAGAAACCTTAGGCGAAGGAAACACAGAGAACGTAAG