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Detailed information on CNT3062349


BLAST search results

BLAST vs Swiss-Prot:
sp|P33628|TBA_PICAB, E-value = 1e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674836Arabidopsis lyrataSetaria viridis15.7336.1581.75137forward
CNT30376989Arabidopsis lyrataArabidopsis thaliana23.5465.7188.29205forward
CNT30617295Arabidopsis lyrataSesamum indicum13.3228.2981.9116forward
CNT30728061Arabidopsis lyrataCorchorus capsularis25.3723.2183.71221forward
CNT30381383Arabidopsis lyrataManihot esculenta24.3412.0782.08212forward
CNT30196749Arabidopsis lyrataPisum sativum24.3452.6184.43212forward
CNT30168132Arabidopsis lyrataPistacia vera27.2157.6683.97237forward
CNT30441907Arabidopsis lyrataAegilops tauschii27.5594.1280.42240forward
CNT30313575Arabidopsis lyrataCamelina sativa26.7510096.14233forward
CNT3078381Arabidopsis lyrataBrassica juncea24.6880.5283.26215forward
CNT30608822Arabidopsis lyrataGossypium raimondii29.5138.3682.88257forward
CNT30623465Arabidopsis lyrataDaucus carota29.2891.0783.53255forward
CNT30721065Arabidopsis lyrataTriticum spelta15.1558.9385.61132forward
CNT30364150Arabidopsis lyrataSorghum bicolor12.5128.5382.57109forward
CNT30621035Arabidopsis lyrataCajanus cajan17.1121.7887.92149forward
CNT30426941Arabidopsis lyrataPapaver somniferum17.3426.2290.07151forward
CNT30569889Arabidopsis lyrataVitis vinifera25.7247.0679.46224forward
CNT3024644Arabidopsis lyrataPopulus trichocarpa20.98.983.52182forward
CNT30321935Arabidopsis lyrataAsparagus officinalis27.6711.3680.5241forward

Expression of CNT3062349

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MTHLETYNPNNKTIYTSQNQPRPKSILILLVPRFKNPKKIQIQIQKNLFSP*

>peptide 2 (54 aa)
MTFRPVIPGTGLTKDEVIRTENLTKRTRSERIHSTRNVLSTASFVEIHIDTFKL*

Sequence

>CNT3062349
TTGCAGAAATTATTTTTTTGGAACATTGTTATAGAGTTACTTGAAACTGAAATGTAGCTCTTTGCAAAATGTAGCACAAACTTGAAAGAACAAAAGCAAT
ATTTTCCACCGACAAAACATTAAGCAATACACGCAAAAGTTTAACAAATCCAGAACGAGATTAGCAAGCTTGAGGGTACGGAAACAGATATCGTAAAGAG
CCTCATTATCCAAAACCATACACTCGTCAGCGTTTTCAACAAGCTGATGCACAGAGAGAGTTGCATTGTATGGCTCAACAACAGTGTCAGAGACCTTAGG
AGAAGGAAACACTGAAAAAGTCATCATCATACGATCTGGATACTCTTCTCTTATCTTAGAAATCAATAGAGTTCCCATTCCAGATCCAGTTCCTCCTCCC
AATGAATGACACACTTGGAAACCTATAATCCAAATAACAAAACCATATATACATCACAAAATCAACCAAGACCTAAATCGATTCTAATCCTTCTCGTTCC
ACGATTCAAAAATCCAAAAAAAATTCAGATCCAGATTCAAAAAAATTTGTTCTCACCTTGAAGACAATCGCTGTTCTCAGCTTCCTTCCTCACAACATCA
AGAACAGAATCAATCAACTCAGCTCCTTCGGTGTAATGACCTTTCGCCCAGTTATTCCCGGCACCGGATTGACCAAAGACGAAGTTATCAGGACGGAAAA
TCTGACCAAACGGACCAGATCTGAGAGAATCCATAGTACCAGGAACGTACTTTCCACCGCTAGCTTCGTTGAAATACACATCGATACGTTCAAGCTGTAA
CGGAGAATCGCCGACGTATTGACCGGTGTGATCAATGCCGTGTTCGTCGCAGATCACTTCCCAGAACTTTG