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Detailed information on CNT30394244


BLAST search results

BLAST vs Swiss-Prot:
sp|O65719|HSP7C_ARATH, E-value = 6e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673056Triticum turgidumSetaria viridis30.7874.6890.56233forward
CNT30535317Triticum turgidumEucalyptus grandis31.0441.4590.21235forward
CNT30616016Triticum turgidumSesamum indicum30.1275.7585.53228forward
CNT30381739Triticum turgidumManihot esculenta50.4652.4782.98382forward
CNT30630063Triticum turgidumVigna unguiculata33.5542.9885.83254forward
CNT30490395Triticum turgidumOlea europaea38.1836.2286.16289forward
CNT30224417Triticum turgidumHordeum vulgare24.4448.4389.19185forward
CNT30568743Triticum turgidumActinidia chinensis10.5725.6488.7580forward
CNT30510893Triticum turgidumSolanum lycopersicum12.6846.8387.596forward
CNT30145283Triticum turgidumMedicago truncatula28.863.5681.65218forward
CNT30441947Triticum turgidumAegilops tauschii50.335092.13381forward
CNT30613976Triticum turgidumArabis alpina38.3141.4384.83290forward
CNT304903Triticum turgidumZea mays19.5530.2788.51148forward
CNT30625375Triticum turgidumDaucus carota24.8381.0380.32188forward
CNT30151237Triticum turgidumBrachypodium distachyon22.5932.2692.98171forward
CNT30578217Triticum turgidumOryza barthii37.7863.791.61286forward
CNT30582481Triticum turgidumEchinochloa crusgalli18.7630.4791.55142forward
CNT30112153Triticum turgidumFicus carica43.8636.8984.94332forward

Expression of CNT30394244

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSQNMHHCIVHDTHKSRDATDQKVQQNFQPR*

>peptide 2 (63 aa)
MPPGMSAPAPWYILAMMGLQRRSSPGSSWRQPSSCAPRPQTCTSLRPGPSSQCRPCSACPCRW*

>peptide 3 (84 aa)
MSSLLSLPLSLVMVILFFWPVVLSSAETFRIPLASMSKQTVIWGTPLGAGGMPESSNLPSRLLSLVLVLSPSNTWMSTPGWLSE*

Sequence

>CNT30394244
CAACAACCAAATTTAAGCTAAGAATTCAGAATGAAATCACACGGGTAGGGTAGTCCAAATAATAAGCATTAAGCTGAAATCAACAATGAGCCAAAACATG
CATCATTGCATTGTTCACGACACACACAAGTCTCGTGATGCTACAGACCAAAAAGTACAACAAAACTTCCAGCCCAGGTGATATGATTGGCACCCAGGAC
TGAATAAAATGGTGTATAGTGTATTTCTCACTATATAAAAGCGACTAACTTAGTCGACCTCCTCGATCTTGGGGCCAGCACCGCCGCTCGCAGCCGGCGC
GTCCTCGTCCATGCCTCCGGGCATGTCAGCACCGGCGCCCTGGTACATCTTGGCGATGATGGGGTTGCAGAGGCGTAGTTCTCCAGGGAGTTCTTGGCGT
CAACCTTCTTCTTGTGCTCCTCGTCCTCAGACTTGTACTTCTCTGCGTCCTGGACCATCTTCTCAATGTCGTCCTTGCTCAGCCTGCCCTTGTCGTTGGT
GATGGTGATCTTGTTCTTCTGGCCAGTGGTCTTGTCCTCAGCAGAGACATTCAGGATACCGTTGGCATCAATGTCGAAGCAGACAGTGATCTGGGGAACA
CCCCTGGGCGCAGGCGGGATGCCAGAGAGCTCAAACTTGCCGAGCAGGTTGTTGTCCCTGGTCCTTGTCCTCTCACCCTCAAACACCTGGATGAGCACAC
CAGGCTGGTTGTCGGAGTAGGTGGAGAAGACCTGCTCCTTCTTGGTGGGGATGGTGG