Detailed information on CNT30224417


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696916Hordeum vulgareOryza sativa25.1327.6788.5496forward
CNT30535317Hordeum vulgareEucalyptus grandis23.0415.5290.9188forward
CNT30381739Hordeum vulgareManihot esculenta23.0412.0982.9588forward
CNT30630063Hordeum vulgareVigna unguiculata22.5114.5588.3786forward
CNT30394244Hordeum vulgareTriticum turgidum48.4324.4489.19185forward
CNT30588413Hordeum vulgareMusa acuminata25.1342.4886.4696forward
CNT30510893Hordeum vulgareSolanum lycopersicum19.6336.5989.3375forward
CNT30441947Hordeum vulgareAegilops tauschii21.7310.8995.1883forward
CNT30613976Hordeum vulgareArabis alpina22.7712.4389.6687forward
CNT30450032Hordeum vulgareSaccharum spontaneum23.5611.2491.1190forward
CNT3067065Hordeum vulgareLeersia perrieri24.6122.1292.5594forward
CNT30621132Hordeum vulgareCajanus cajan22.7714.8789.6687forward
CNT30369286Hordeum vulgareOryza glumipatula25.1316.0891.6796forward
CNT30151237Hordeum vulgareBrachypodium distachyon25.1318.1188.5496forward
CNT30578217Hordeum vulgareOryza barthii25.1321.3887.596forward
CNT30496988Hordeum vulgareDigitaria exilis23.569.4191.1190forward
CNT30112153Hordeum vulgareFicus carica22.779.6789.6687forward

Expression of CNT30224417

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MPPGMSAPAPWEFLASTFFLCSSSSDLYFSASWTIFSMSSLLS

>peptide 2 (44 aa)
MTKTCIIAMFKTDTLVSRLNKIFNPGDMIGTQGRNKWRIVYFSL*

Sequence

>CNT30224417
CAGGTAGGTAGTCCAAGCAATAAGCATTAAGCTGAAATCAACAATGACCAAAACATGCATCATTGCAATGTTTAAGACAGATACACTAGTCTCACGATTA
AACAAAATTTTCAACCCAGGTGATATGATTGGCACCCAGGGCCGAAACAAATGGCGTATAGTGTATTTCTCACTATGAAAGAGAACTAACTTAGTCGACC
TCCTCGATCTTGGGCCCAGCACCGCCGCTGGCAGCCGGCACATCATCGTCCATGCCTCCGGGCATGTCAGCACCAGCACCCTGGGAGTTCTTGGCGTCAA
CCTTCTTCTTGTGCTCCTCGTCCTCAGACTTGTACTTCTCTGCGTCCTGGACCATCTTCTCGATGTCGTCCTTGCTCAGCCT