« Back to Lactuca sativa search


Detailed information on CNT30360803


BLAST search results

BLAST vs Swiss-Prot:
sp|P22954|HS702_ARATH, E-value = 2e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696916Lactuca sativaOryza sativa13.4929.9784.62104forward
CNT30672831Lactuca sativaSetaria viridis10.8928.2885.7184forward
CNT30535611Lactuca sativaEucalyptus grandis34.510.5881.2266forward
CNT30515289Lactuca sativaJuglans regia26.0741.9680.1201forward
CNT30588413Lactuca sativaMusa acuminata11.5439.3885.3989forward
CNT30613976Lactuca sativaArabis alpina35.2838.8682.72272forward
CNT305922Lactuca sativaZea mays10.6422.3484.1582forward
CNT30625375Lactuca sativaDaucus carota7.6525.4388.1459forward
CNT30685597Lactuca sativaTriticum urartu5.8422.591.1145forward
CNT30368207Lactuca sativaSorghum bicolor7.2620.9787.556forward
CNT3056582Lactuca sativaAmborella trichopoda18.2921.8685.82141forward
CNT30578217Lactuca sativaOryza barthii13.4923.1683.65104forward

Expression of CNT30360803

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MIGLHTFSSSFILSSNSSASANWLVSNQAIASSIASSIFFLSPGVNFSPIFSSFTVFLML*

>peptide 2 (32 aa)
ENLGLSMFFFNFGLLQCKINIFCLIGCCSVIY*

Sequence

>CNT30360803
GAAAATCTTGGATTATCAATGTTTTTTTTCAATTTTGGATTATTACAATGTAAAATAAACATTTTCTGTTTAATCGGCTGCTGTTCTGTTATATATTAAA
GAAAACGATAATAAGCAAAAAGGTTACTGGAAATATAGAAAATCCATAAAAATCCAAAATTCACCCCCGATAAAAAAGAGGTACCACCAGAATTACCAAA
CATAAAATTGTCTTAAAGTATCATCACCACAGAACCAAAACTAAAGAAAATATAATTTCATAAAAATAAAAAAAAAAAAAAAAAAAAAAAAACCAAGGAG
ACGTCGACAAAATTACTAGACTTAGTCGACCTCCTCGATCTTAGGGCCAGCACCGCCACCAGAAGGTGCGGGATCCTCATCCATACCACCAGCAGCATCA
CCTGCTCCACCTTGATACATCTTCGCAATGATCGGGTTGCACACGTTCTCAAGCTCCTTCATCTTATCCTCAAACTCATCCGCCTCAGCCAACTGGTTGG
TATCCAACCAAGCAATCGCCTCATCAATCGCATCCTCAATCTTCTTCTTGTCACCTGGAGTCAACTTCTCACCAATTTTCTCATCCTTCACTGTGTTCCT
CATGTTGTAAGCATAATTCTCCAAAGCATTCTTCGCCTCCACCTTCTTCTTGTGCTCCTCATCTTCAGACTTATACTTCTCCGGATTCCGGAGAGTTCAA
ATTTCCCCAACAAGTTGTTGTCACGTGTCCTTGTCCTCTCACCTTCGTACACCTGGATCAACACTCCAGGC