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Detailed information on CNT30581231


BLAST search results

BLAST vs Swiss-Prot:
sp|P10708|CB12_SOLLC, E-value = 1e-35

BLAST vs NONCODE:
NONBNAT006615, E-value = 1e-17

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30252645Echinochloa crusgalliAvena sativa98.6182.8892.96213forward
CNT30612607Echinochloa crusgalliArabis alpina73.1529.3181.65158forward
CNT30680070Echinochloa crusgalliTriticum urartu99.0737.6193.93214forward
CNT30339489Echinochloa crusgalliEragrostis tef47.22684.31102forward
CNT30477381Echinochloa crusgalliArabidopsis halleri46.333.6783100forward
CNT30117266Echinochloa crusgalliOryza nivara81.4848.7595.45176forward
CNT30604463Echinochloa crusgalliOryza punctata28.75.2987.162forward

Expression of CNT30581231

Peptides detected in this lncRNA

>peptide 1 (70 aa)
EDGGVAGVGEMGEEGGGVGEVLLLAGGVPEGCVEDADLGQELRDEDTRRAEHRPPAVHQLRLHVPPQALRV

>peptide 2 (70 aa)
KMVAWPGSARWAKRVVVSVKYCCSPAVYQKGVLRMPILVRNSGMKIPAAPSIAHRQCTSSACTFHRKLSGS

Sequence

>CNT30581231
GGAAGATGGTGGCGTGGCCGGGGTCGGCGAGATGGGCGAAGAGGGTGGTGGTGTCGGTGAAGTACTGTTGCTCGCCGGCGGTGTACCAGAAGGGTGTGTT
GAGGATGCCGATCTTGGTCAGGAACTCCGGGATGAAGATACCCGCCGCGCCGAGCATCGCCCACCGGCAGTGCACCAGCTCCGCCTGCACGTTCCACCGC
AAGCTCTCCGGGTCAG