Detailed information on CNT3050430


BLAST search results

BLAST vs Swiss-Prot:
sp|P13869|CB12_PETHY, E-value = 2e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30282763Cucumis sativusChenopodium quinoa58.8726.2682.78209forward
CNT30727388Cucumis sativusCorchorus capsularis21.6923.6288.3177forward
CNT30197165Cucumis sativusPisum sativum54.6562.5882.99194forward
CNT30708597Cucumis sativusGlycine max40.2828.681.82143forward
CNT3044098Cucumis sativusPrunus dulcis62.8242.6486.1223forward
CNT30657963Cucumis sativusTriticum dicoccoides2025.3688.7371forward
CNT30612607Cucumis sativusArabis alpina31.8320.9685.84113forward
CNT303716Cucumis sativusZea mays27.3235.0285.5797forward
CNT30651400Cucumis sativusRosa chinensis64.2347.0185.09228forward
CNT30126375Cucumis sativusCorymbia citriodora60.2865.4482.24214forward
CNT30477381Cucumis sativusArabidopsis halleri29.5835.3583.81105forward
CNT30619887Cucumis sativusCajanus cajan63.186.4985.71224forward
CNT30496219Cucumis sativusDigitaria exilis18.8729.6589.5567forward
CNT30725037Cucumis sativusLupinus angustifolius25.9210.7485.8792forward

Expression of CNT3050430

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MCWNQAPITANIANRPFLISFVLNSLIFSGDPLPHPSGSNQSPPGYPTSVPVSLLLGKIGSVLTHPGLRISA

>peptide 2 (76 aa)
LDQSCDSIHKFVPQPTTNITTSLLFAPQFLHFGVSKKVINGTGAGVNVLEPSSHHRQHSQSSVLNLFRSQFLNLFR*

Sequence

>CNT3050430
TTAGATCAAAGTTGTGATTCAATACATAAATTTGTCCCTCAACCCACAACAAACATCACTACATCTCTCCTATTTGCTCCTCAATTTCTTCACTTTGGTG
TGAGCAAAAAGGTTATCAATGGGACCGGTGCCGGTGTAAATGTGTTGGAACCAAGCTCCCATCACCGCCAACATAGCCAATCGTCCGTTCTTAATCTCTT
TCGTTCTCAATTCCTTAATCTTTTCCGGTGATCCGCTGCCCCATCCGAGTGGGTCAAACCAGAGCCCACCAGGGTACCCAACGTCGGTTCCGGTCAGCTT
GTTGTTAGGGAAAATCGGGTCGGTGTTGACGCATCCGGGTTTGAGGATATCGGCC