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Detailed information on CNT30441391


BLAST search results

BLAST vs Swiss-Prot:
sp|P27522|CB13_SOLLC, E-value = 8e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30303822Aegilops tauschiiTriticum aestivum76.7673.9497.27403forward
CNT30238548Aegilops tauschiiBrassica oleracea22.8614.2380.83120forward
CNT3077678Aegilops tauschiiBrassica juncea22.8619.5881.67120forward
CNT30264666Aegilops tauschiiBrassica rapa22.8613.6181.67120forward
CNT30611481Aegilops tauschiiArabis alpina22.6714.685.71119forward
CNT30583095Aegilops tauschiiEchinochloa crusgalli48.3828.3289.37254forward

Expression of CNT30441391

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MHAARVQIYILHPPSHIYLSHAHVSHDDGYHAQDDDARIGSDRFRLVELEAGEDVVVDGV*

>peptide 2 (43 aa)
MGRPSTGRCPPAGSRLPGTTGSPSPGAPGPPCPGGRNQSHRAAC

>peptide 3 (41 aa)
MLLLTGSERWSRRFWKGPGSTASPWSPGCTSPGAAGAPRSR*

>peptide 4 (34 aa)
MEPGLYQSWSRRCSAKPMSAISNTKSVYGSAQYW*

>peptide 5 (75 aa)
KKDTDVDEDDERCNALIFVARYKYYKHARSTRTNLHFTPTLAYIPLARSRFPRRRVPCTGRRCSDRIGSISPSGT*

Sequence

>CNT30441391
AAAGAAAGACACAGATGTTGATGAAGATGACGAGAGATGCAATGCACTAATTTTCGTAGCACGATATAAATATTACAAGCATGCACGCAGCACGCGTACA
AATTTACATTTTACACCCACCCTCGCATATATACCTCTCGCACGCTCACGTTTCCCACGACGACGGGTACCATGCACAGGACGACGATGCTCGGATCGGA
TCGGATCGATTTCGCCTAGTGGAACTTGAGGCTGGTGAGGATGTTGTTGTTGACGGGGTCTGAGAGGTGGTCGAGGAGGTTCTGGAAGGGCCCAGGAAGT
ACTGCTTCCCCATGGAGCCCGGGTTGTACCAGTCCTGGAGCCGCCGGTGCTCCGCGAAGCCGATGAGCGCCATCTCGAACACGAAGAGCGTGTATGGGTC
GGCCCAGTACTGGTAGGTGCCCGCCGGCGGGATCGCGCCTGCCTGGAACCACGGGATCGCCGTCTCCGGGGGCACCAGGCCCACCTTGCCCAGGGGGTCG
AAACCAAAGTCACCGGGCAGCCTGC