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Detailed information on CNT30303822


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 2e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30238548Triticum aestivumBrassica oleracea22.0214.2380.83120forward
CNT30441391Triticum aestivumAegilops tauschii73.9476.7697.27403forward
CNT3077678Triticum aestivumBrassica juncea22.0219.5881.67120forward
CNT30264666Triticum aestivumBrassica rapa22.0213.6181.67120forward
CNT30611481Triticum aestivumArabis alpina21.8314.685.71119forward
CNT30368762Triticum aestivumSorghum bicolor42.7546.1482.4233forward
CNT30595683Triticum aestivumOryza meridionalis65.1427.3786.2355forward
CNT30369533Triticum aestivumOryza glumipatula43.342.2286.86236forward
CNT30575228Triticum aestivumOryza barthii43.318.6386.86236forward
CNT30583025Triticum aestivumEchinochloa crusgalli66.0644.8383.61360forward
CNT30115627Triticum aestivumOryza nivara55.7817.7687.5304forward
CNT30725730Triticum aestivumLupinus angustifolius20.7316.8782.3113forward

Expression of CNT30303822

Peptides detected in this lncRNA

>peptide 1 (56 aa)
RVQIYILHPPSHIYLSHAHVSHDDGYHAQDDDARIGSDRFRLVELEAGEDVVVDGV*

>peptide 2 (54 aa)
MLLLTGSERWSRRPRKYCFPMEPGLYQSWSRRCSAKPMSAISNTKSVYGSAQYW*

>peptide 3 (50 aa)
MGRPSTGRCPPAGSRLPGTTGSPSPGAPGPPCPGPPGRSCPPPPSSPSGR*

>peptide 4 (44 aa)
RTNLHFTPTLAYIPLARSRFPRRRVPCTGRRCSDRIGSISPSGT*

>peptide 5 (41 aa)
AYKFTFYTHPRIYTSRTLTFPTTTGTMHRTTMLGSDRIDFA*

Sequence

>CNT30303822
CGCGTACAAATTTACATTTTACACCCACCCTCGCATATATACCTCTCGCACGCTCACGTTTCCCACGACGACGGGTACCATGCACAGGACGACGATGCTC
GGATCGGATCGGATCGATTTCGCCTAGTGGAACTTGAGGCTGGTGAGGATGTTGTTGTTGACGGGGTCTGAGAGGTGGTCGAGGAGGCCCAGGAAGTACT
GCTTCCCCATGGAGCCCGGGTTGTACCAGTCCTGGAGCCGCCGGTGCTCCGCGAAGCCGATGAGCGCCATCTCGAACACGAAGAGCGTGTATGGGTCGGC
CCAGTACTGGTAGGTGCCCGCCGGCGGGATCGCGCCTGCCTGGAACCACGGGATCGCCGTCTCCGGGGGCACCAGGCCCACCTTGCCCAGGGCCTCCGGG
GCGATCATGCCCACCACCCCCATCATCGCCGTCCGGCCGTTGAAGATCTCGCCGTAGGCCAGCCACCTGGGCTCGATGAACCCGCCGGTGCCCTCCGGGT
CGGACAGCCCCAAGGGGTCGAAACCAAAGTCACCGGGCAGCCTGC