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Detailed information on CNT30610134


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694998Gossypium raimondiiOryza sativa51.4821.2984.43122forward
CNT30673818Gossypium raimondiiSetaria viridis43.8827.383.65104forward
CNT30521507Gossypium raimondiiSetaria italica43.8826.483.65104forward
CNT30372941Gossypium raimondiiArabidopsis thaliana69.6217.2684.85165forward
CNT30712300Gossypium raimondiiGlycine max68.7820.0783.44163forward
CNT30164849Gossypium raimondiiPistacia vera70.4629.3585.03167forward
CNT30290454Gossypium raimondiiTriticum aestivum46.4150.9386.36110forward
CNT30387265Gossypium raimondiiTriticum turgidum46.4119.586.36110forward
CNT30561726Gossypium raimondiiActinidia chinensis64.9831.4385.06154forward
CNT3088598Gossypium raimondiiVigna radiata50.2125.0584.87119forward
CNT30510234Gossypium raimondiiSolanum lycopersicum44.317.0585.71105forward
CNT30554351Gossypium raimondiiOryza glaberrima60.3421.3883.92143forward
CNT30144738Gossypium raimondiiMedicago truncatula28.2721.285.0767forward
CNT30244221Gossypium raimondiiAvena sativa45.1521.185.05107forward
CNT30133222Gossypium raimondiiLolium perenne43.8811.4984.62104forward
CNT30680245Gossypium raimondiiTriticum urartu46.4123.6686.36110forward
CNT30619846Gossypium raimondiiCajanus cajan59.9225.4983.1142forward
CNT30576990Gossypium raimondiiOryza barthii45.1518.185.05107forward
CNT30583062Gossypium raimondiiEchinochloa crusgalli43.8813.3882.69104forward
CNT30117183Gossypium raimondiiOryza nivara51.4818.0584.43122forward
CNT30557390Gossypium raimondiiPanicum hallii43.8815.2984.62104forward
CNT30727018Gossypium raimondiiLupinus angustifolius39.2413.8283.8793forward

Expression of CNT30610134

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MFKLCLSNTEGTSSTLHKLSSSLEPPLVPSLCLANVKLAVVDGGCY*

Sequence

>CNT30610134
GTCCGACCAGAAGTTAATATTCAACATCCACAAATTTACATAAAATCCCTCTTCCATGTTTAAGCTTTGTTTAAGCAACACTGAAGGAACTAGCAGCACT
CTCCACAAACTTTCTAGCTCCCTTGAACCACCTCTTGTCCCCAGCTTGTGCCTTGCAAATGTAAAGCTTGCCGTTGTTGACGGTGGCTGTTATTAGCTGG
TGCTTCCCACCTTCGTCTCCGTCGGCGGTTCTTGTCA