Detailed information on CNT3088598


BLAST search results

BLAST vs Swiss-Prot:
sp|P16059|PSBP_PEA, E-value = 3e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372941Vigna radiataArabidopsis thaliana27.5813.788.55131forward
CNT30712213Vigna radiataGlycine max30.3258.7895.83144forward
CNT30164849Vigna radiataPistacia vera25.6821.4489.34122forward
CNT30290454Vigna radiataTriticum aestivum11.1624.5488.6853forward
CNT30510234Vigna radiataSolanum lycopersicum21.6816.7288.35103forward
CNT30610134Vigna radiataGossypium raimondii25.0550.2184.87119forward
CNT30619846Vigna radiataCajanus cajan23.7920.2992.04113forward
CNT30356129Vigna radiataLactuca sativa2833.1781.95133forward
CNT30727018Vigna radiataLupinus angustifolius27.7919.6186.36132forward

Expression of CNT3088598

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MYSLPSFTVAVISWCFPPSSPSAVLVNTDKL*

>peptide 2 (81 aa)
MTAAAPMSTVRANLRETRVVLASPSWTTCFCALQTMWLGLVVSTWRCGEALAGLVRAWWCKKHWVEAIVLKTQNLHSFFGL*

Sequence

>CNT3088598
CTTGCTCCCTTAAACCACCTCTTGTCTCCAGCTTGAGCCTTGCAGATGTATAGTTTGCCATCTTTCACAGTTGCTGTAATCAGCTGGTGCTTCCCACCTT
CATCTCCATCAGCTGTTCTTGTTAACACAGACAAACTGTAGTACGTTTTCCCATCAATGACAGCAGCAGCACCAATGAGCACAGTGAGGGCCAACCTGCG
AGAGACAAGGGTGGTGTTGGCATCACCCTCTTGGACAACCTGCTTCTGTGCCTTGCAGACAATGTGGTTAGGTTTGGTGGTCAGCACCTGGCGCTGTGGT
GAAGCTCTAGCAGGGTTGGTGAGGGCATGGTGGTGCAAGAAACATTGGGTGGAGGCCATTGTGCTCAAAACTCAAAATCTTCACAGTTTCTTTGGCCTGT
GATTACAGTGTAGTAGGCAAAGTGTTTGTGGACTTTGAAGTGGTTTTGATGCGTGGTGGATGATGTGGCAATGAA