Detailed information on CNT30673818


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694998Setaria viridisOryza sativa34.1222.6992.31130forward
CNT30521507Setaria viridisSetaria italica84.2581.47100321forward
CNT30290454Setaria viridisTriticum aestivum40.9472.2289.1156forward
CNT30387265Setaria viridisTriticum turgidum40.9427.6689.1156forward
CNT30560151Setaria viridisActinidia chinensis29.929.0985.09114forward
CNT30554351Setaria viridisOryza glaberrima40.9423.3293.59156forward
CNT30243706Setaria viridisAvena sativa41.4727.2489.87158forward
CNT30133222Setaria viridisLolium perenne41.4717.4691.77158forward
CNT30610134Setaria viridisGossypium raimondii27.343.8883.65104forward
CNT30680245Setaria viridisTriticum urartu33.627.5390.62128forward
CNT30356129Setaria viridisLactuca sativa24.9323.6983.1695forward
CNT30576990Setaria viridisOryza barthii30.7119.892.31117forward
CNT30583062Setaria viridisEchinochloa crusgalli42.7820.9897.55163forward
CNT30117183Setaria viridisOryza nivara34.1219.2392.31130forward
CNT30557390Setaria viridisPanicum hallii42.2623.6898.76161forward

Expression of CNT30673818

Peptides detected in this lncRNA

>peptide 1 (88 aa)
MPSPTSLSAYTRCTPENQGKECLCDAEGAGRLLDALPGALEPPLVAGLRLADVELAVRDGGRDELVLAALVAVRRDEVRVRLGLPEHVG

>peptide 2 (61 aa)
MYNQRSTHACPAQPLYLRTHGAPLKTKEKNAYATLKELAAFSTPFLAPLNHLLSPACALQM*

>peptide 3 (38 aa)
MRAEMNPCSPWPLFSCTIKGAHMHAQPNLSICVHTVHP*

Sequence

>CNT30673818
AAAAACGAAGCATTAAGATACTAAGAGTTCTTAGACATCGTGGATGAGAGCAGAAATGAATCCTTGCTCTCCTTGGCCTTTGTTCTCATGTACAATCAAA
GGAGCACACATGCATGCCCAGCCCAACCTCTCTATCTGCGTACACACGGTGCACCCCTGAAAACCAAGGAAAAGAATGCTTATGCGACGCTGAAGGAGCT
GGCCGCCTTCTCGACGCCCTTCCTGGCGCCCTTGAACCACCTCTTGTCGCCGGCCTGCGCCTTGCAGATGTAGAGCTTGCCGTCCGAGACGGTGGCCGTG
ATGAGCTGGTGCTTGCCGCCCTCGTCGCCGTCCGCCGCGATGAAGTCCGTGTTCGCCTTGGGCTTCCCGAACACGTTGGCT