Detailed information on CNT30521507


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694998Setaria italicaOryza sativa32.9922.6992.31130forward
CNT30673818Setaria italicaSetaria viridis81.4784.25100321forward
CNT30290454Setaria italicaTriticum aestivum41.6275.9389.02164forward
CNT30387265Setaria italicaTriticum turgidum41.8829.2689.09165forward
CNT30560151Setaria italicaActinidia chinensis31.229.8184.55123forward
CNT30554351Setaria italicaOryza glaberrima41.1224.2293.83162forward
CNT30610134Setaria italicaGossypium raimondii26.443.8883.65104forward
CNT30680245Setaria italicaTriticum urartu34.5229.2590.44136forward
CNT30356129Setaria italicaLactuca sativa28.4327.9383.04112forward
CNT30117183Setaria italicaOryza nivara32.9919.2392.31130forward

Expression of CNT30521507

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MRAEMNPCSPWPLFSCTIKGAHMHAQPNLSICVHTVHP*

>peptide 2 (35 aa)
MSWCLPPSSPSAVLDVGCRHRVGLEPALHAQAQVNS

>peptide 3 (97 aa)
MPSPTSLSAYTRCTPENQGKECLCDAEGAGRLLDALPGALEPPLVAGLRLADVELAVRDGGRDELVLAALVAVRRPRCWLSPPRRSRTRPARASTGK*

>peptide 4 (61 aa)
MYNQRSTHACPAQPLYLRTHGAPLKTKEKNAYATLKELAAFSTPFLAPLNHLLSPACALQM*

Sequence

>CNT30521507
GATACTAAGAGTTCTTAGACATCGTGGATGAGAGCAGAAATGAATCCTTGCTCTCCTTGGCCTTTGTTCTCATGTACAATCAAAGGAGCACACATGCATG
CCCAGCCCAACCTCTCTATCTGCGTACACACGGTGCACCCCTGAAAACCAAGGAAAAGAATGCTTATGCGACGCTGAAGGAGCTGGCCGCCTTCTCGACG
CCCTTCCTGGCGCCCTTGAACCACCTCTTGTCGCCGGCCTGCGCCTTGCAGATGTAGAGCTTGCCGTCCGAGACGGTGGCCGTGATGAGCTGGTGCTTGC
CGCCCTCGTCGCCGTCCGCCGTCCTCGATGTTGGCTGTCGCCACCGCGTCGGTCTCGAACCCGCCCTGCACGCGCAAGCACAGGTAAATAGCCG